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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166750 (14 seq.)
>C171000421
CP007121
Thermotogota
Thermosipho sp. 1070 [CP007121]
360451
360527
+
Arg
TCG
-
¡û
>C171000733
CP007223
Thermotogota
Thermosipho sp. 1063 [CP007223]
360471
360547
+
Arg
TCG
-
¡û
>C171001365
CP007389
Thermotogota
Thermosipho melanesiensis 431 [CP007389]
126093
126169
+
Arg
TCG
-
¡û
>C025680
CP000716
Thermotogota
Thermosipho melanesiensis BI429 [CP000716]
126093
126169
+
Arg
TCG
[Ensembl]
¡û
>W09106605
AAWH01000018
Thermotogota
Thermosipho melanesiensis BI429 [AAWH]
28234
28310
+
Arg
TCG
[ENA]
¡û
>W2110747233
LNGA01000032
Thermotogota
Thermosipho sp. 1244 [LNGA]
68930
68854
-
Arg
TCG
[ENA]
¡û
>W1710660931
JYCX01000001
Thermotogota
Thermosipho melanesiensis [JYCX]
126093
126169
+
Arg
TCG
[ENA]
¡û
>W1710660979
JYCY01000001
Thermotogota
Thermosipho melanesiensis [JYCY]
126093
126169
+
Arg
TCG
[ENA]
¡û
>W1710661025
JYCZ01000001
Thermotogota
Thermosipho melanesiensis [JYCZ]
126093
126169
+
Arg
TCG
[ENA]
¡û
>W1710661071
JYDA01000001
Thermotogota
Thermosipho melanesiensis [JYDA]
125988
126064
+
Arg
TCG
[ENA]
¡û
>W1710661115
JYDB01000001
Thermotogota
Thermosipho melanesiensis [JYDB]
125969
126045
+
Arg
TCG
[ENA]
¡û
>W1710701228
LBEX01000004
Thermotogota
Thermosipho sp. 1074 [LBEX]
51435
51511
+
Arg
TCG
[ENA]
¡û
>W1710701274
LBEY01000006
Thermotogota
Thermosipho sp. 1223 [LBEY]
44558
44634
+
Arg
TCG
[ENA]
¡û
>W1710701318
LBFC01000006
Thermotogota
Thermosipho affectus [LBFC]
49925
50001
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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