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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166778 (13 seq.)
>WENV180297057
OBJA01008660
[OBJA] soil metagenome; sediment, water from around vicinity
3548
3472
-
Asn
GTT
[ENA]
¢þ
>WENV180297646
OBJA01056342
[OBJA] soil metagenome; sediment, water from around vicinity
926
850
-
Asn
GTT
[ENA]
¢þ
>WENV170015648
AZII01001022
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
1584
1660
+
Asn
GTT
[ENA]
¢þ
>WENV170646484
JQGR01013302
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
303
227
-
Asn
GTT
[ENA]
¢þ
>WENV170654835
JRYL01034448
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
102
178
+
Asn
GTT
[ENA]
¢þ
>WENV170704466
LLEK01000685
[LLEK] bioreactor metagenome; day79 25degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
3092
3168
+
Asn
GTT
[ENA]
¢þ
>C181029211
CP017948
Mycoplasmatota
Tenericutes bacterium MO-XQ [CP017948]
1548613
1548537
-
Asn
GTT
-
¡û
>C181029238
CP017950
Mycoplasmatota
Tenericutes bacterium MZ-XQ [CP017950]
1628545
1628469
-
Asn
GTT
-
¡û
>C141012130
FO681348
Mycoplasmatota
Paracholeplasma brassicae O502 [FO681348]
258664
258740
+
Asn
GTT
[Ensembl]
¡û
>C141012131
FO681348
Mycoplasmatota
Paracholeplasma brassicae O502 [FO681348]
259012
259088
+
Asn
GTT
[Ensembl]
¡û
>C141012155
FO681348
Mycoplasmatota
Paracholeplasma brassicae O502 [FO681348]
1438957
1438881
-
Asn
GTT
[Ensembl]
¡û
>C141012156
FO681348
Mycoplasmatota
Paracholeplasma brassicae O502 [FO681348]
1438609
1438533
-
Asn
GTT
[Ensembl]
¡û
>C141012157
FO681348
Mycoplasmatota
Paracholeplasma brassicae O502 [FO681348]
1432432
1432356
-
Asn
GTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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