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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166960 (24 seq.)
>WENV180530658
OCHK01006362
[OCHK] human gut metagenome; human gut
5188
5114
-
Arg
ACG
[ENA]
¡û
>WENV180617406
OCQA01011088
[OCQA] human gut metagenome; human gut
461
535
+
Arg
ACG
[ENA]
¡û
>WENV181436331
OGDF01015302
[OGDF] human gut metagenome; human gut
4982
4908
-
Arg
ACG
[ENA]
¡û
>WENV181675555
OGOP01006744
[OGOP] human gut metagenome; faeces
4997
4923
-
Arg
ACG
[ENA]
¡û
>WENV181688569
OGOX01081721
[OGOX] human gut metagenome; faeces
201
275
+
Arg
ACG
[ENA]
¡û
>WENV182112020
OHIU01000217
[OHIU] human gut metagenome; feces
35991
36065
+
Arg
ACG
[ENA]
¡û
>WENV182140117
OHKP01050074
[OHKP] human gut metagenome; feces
206
280
+
Arg
ACG
[ENA]
¡û
>WENV182143262
OHKV01000318
[OHKV] human gut metagenome; feces
206
280
+
Arg
ACG
[ENA]
¡û
>WENV182160483
OHME01002113
[OHME] human gut metagenome; feces
5000
4926
-
Arg
ACG
[ENA]
¡û
>WENV182172293
OHMY01001895
[OHMY] human gut metagenome; feces
1261
1335
+
Arg
ACG
[ENA]
¡û
>WENV182186109
OHOI01002019
[OHOI] human gut metagenome; feces
201
275
+
Arg
ACG
[ENA]
¡û
>WENV182220636
OHQS01002341
[OHQS] human gut metagenome; feces
4998
4924
-
Arg
ACG
[ENA]
¡û
>WENV182537432
OIXH01007583
[OIXH] human gut metagenome; faeces
199
273
+
Arg
ACG
[ENA]
¡û
>WENV182894340
OKSL01001640
[OKSL] human gut metagenome; feces
7167
7093
-
Arg
ACG
[ENA]
¡û
>WENV182919101
OKTX01000897
[OKTX] human gut metagenome; feces
12561
12487
-
Arg
ACG
[ENA]
¡û
>WENV183124551
OLNW01020627
[OLNW] human gut metagenome; faeces
201
275
+
Arg
ACG
[ENA]
¡û
>WENV183165607
OLOX01009241
[OLOX] human gut metagenome; faeces
4908
4834
-
Arg
ACG
[ENA]
¡û
>WENV183328302
OLWA01008078
[OLWA] human gut metagenome; faeces
5008
4934
-
Arg
ACG
[ENA]
¡û
>WENV170079491
CDZW01006777
[CDZW] gut metagenome; human stools
672
746
+
Arg
ACG
[ENA]
¡û
>WENV170081945
CDZY01033108
[CDZY] gut metagenome; human stools
465
539
+
Arg
ACG
[ENA]
¡û
>W09110587
ABVQ01000036
Bacillota
[Bacteroides] pectinophilus ATCC 43243 [ABVQ]
358388
358462
+
Arg
ACG
[ENA]
¡û
>W2010263427
CABKNS020000008
Bacillota
[Bacteroides] pectinophilus [CABKNS]
1348868
1348942
+
Arg
ACG
[ENA]
¡û
>C231449154
CP102260
Bacillota
[Bacteroides] pectinophilus ATCC 43243 [CP102260]
2574083
2574009
-
Arg
ACG
-
¡û
>W1511578548
LARB01000139
Bacillota
Ruminococcus sp. A254.MGS-254 [LARB]
1450
1524
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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