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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167088 (67 seq.)
>W1710797136
LJSU01000009
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
147210
147286
+
Arg
CCG
[ENA]
¡û
>W1711176075
LWFD01000076
Alphaproteobacteria
Sulfitobacter sp. HI0054 [LWFD]
914
838
-
Arg
CCG
[ENA]
¡û
>C171108694
CP020474
Alphaproteobacteria
Roseovarius mucosus SMR3 [CP020474]
190954
190878
-
Arg
CCG
-
¡û
>w027741
ABCL01000004
Alphaproteobacteria
Roseovarius sp. TM1035 [ABCL]
184202
184124
-
Arg
CCG
[ENA]
¡û
>w012856
AAMV01000001
Alphaproteobacteria
Roseovarius sp. 217 [AAMV]
409942
409864
-
Arg
CCG
[ENA]
¡û
>w011780
AALV01000002
Alphaproteobacteria
Sulfitobacter sp. EE-36 [AALV]
15971
16049
+
Arg
CCG
[ENA]
¡û
>W141043783
AMGO01000052
Alphaproteobacteria
Oceaniovalibus guishaninsula JLT2003 [AMGO]
50370
50294
-
Arg
CCG
[ENA]
¡û
>WENV180595676
OCPF01004181
[OCPF] marine metagenome; ENVO.00002150
346
422
+
Arg
CCG
[ENA]
¡û
>WENV181234235
OFEU01000010
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
193716
193640
-
Arg
CCG
[ENA]
¡û
>WENV182542915
OJAZ01007359
[OJAZ] seawater metagenome; Sea water
607
531
-
Arg
CCG
[ENA]
¡û
>WENV182544065
OJBE01000162
[OJBE] seawater metagenome; Sea water
1629
1553
-
Arg
CCG
[ENA]
¡û
>WENV182546849
OJBP01008557
[OJBP] seawater metagenome; Sea water
149
225
+
Arg
CCG
[ENA]
¡û
>WENV182584765
OJHG01009161
[OJHG] seawater metagenome; Sea water
1391
1315
-
Arg
CCG
[ENA]
¡û
>WENV182586912
OJHK01012782
[OJHK] seawater metagenome; Sea water
400
476
+
Arg
CCG
[ENA]
¡û
>WENV182591902
OJIO01014752
[OJIO] seawater metagenome; Sea water
1235
1159
-
Arg
CCG
[ENA]
¡û
>WENV182592731
OJIR01014525
[OJIR] seawater metagenome; Sea water
151
75
-
Arg
CCG
[ENA]
¡û
>WENV170015273
AZIG01000026
[AZIG] marine sediment metagenome; enrichment culture of sample MGS-AQ(UA) from oil contaminated terminal site at a crude oil
192
268
+
Arg
CCG
[ENA]
¡û
>WENV170256451
CEQX01089757
[CEQX] marine metagenome genome assembly TARA_070_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
205
129
-
Arg
CCG
[ENA]
¡û
>WENV170269220
CERH01074661
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1600
1524
-
Arg
CCG
[ENA]
¡û
>WENV170477797
CEVJ01137943
[CEVJ] marine metagenome genome assembly TARA_146_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
186
110
-
Arg
CCG
[ENA]
¡û
>WENV170705263
LLEQ01001847
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1255
1331
+
Arg
CCG
[ENA]
¡û
>WENV170962495
MRWF01018128
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1647
1723
+
Arg
CCG
[ENA]
¡û
>WENV170963822
MRWG01000869
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
23813
23889
+
Arg
CCG
[ENA]
¡û
>WENV170964347
MRWG01008784
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1948
2024
+
Arg
CCG
[ENA]
¡û
>C181123448
CP025815
Alphaproteobacteria
Sulfitobacter sp. JL08 [CP025815]
2113017
2112941
-
Arg
CCG
-
¡û
>C181187993
CP030099
Alphaproteobacteria
Roseovarius sp. AK1035 [CP030099]
3133512
3133436
-
Arg
CCG
-
¡û
>C191184398
CP040932
Alphaproteobacteria
Oceanicola sp. D3 [CP040932]
2036318
2036394
+
Arg
CCG
-
¡û
>W141818744
JQLS01000008
Alphaproteobacteria
Roseovarius sp. MCTG156(2b) [JQLS]
1556812
1556736
-
Arg
CCG
[ENA]
¡û
>W1910443137
FWFV01000001
Alphaproteobacteria
Palleronia marisminoris CECT 7066 [FWFV]
44604
44680
+
Arg
CCG
[ENA]
¡û
>W1810685660
QKZL01000003
Alphaproteobacteria
Palleronia aestuarii DSM 22009 [QKZL]
282033
282109
+
Arg
CCG
[ENA]
¡û
>W1810692271
QLIW01000001
Alphaproteobacteria
Rhodobacteraceae bacterium AsT-22 [QLIW]
219438
219514
+
Arg
CCG
[ENA]
¡û
>W2010302744
CABVLE010000037
Alphaproteobacteria
Roseovarius sp. EC-SD190 [CABVLE]
13608
13532
-
Arg
CCG
[ENA]
¡û
>W2010302965
CABVLJ010000029
Alphaproteobacteria
Roseovarius sp. EC-HK134 [CABVLJ]
618570
618494
-
Arg
CCG
[ENA]
¡û
>W2010406429
FWFT01000001
Alphaproteobacteria
Pseudooctadecabacter jejudonensis CECT 8397 [FWFT]
522365
522289
-
Arg
CCG
[ENA]
¡û
>W2010406501
FWFV01000001
Alphaproteobacteria
Palleronia marisminoris CECT 7066 [FWFV]
44604
44680
+
Arg
CCG
[ENA]
¡û
>W2010582833
JAAZTC010000002
Alphaproteobacteria
Rhodobacteraceae bacterium R_SAG8 [JAAZTC]
79296
79220
-
Arg
CCG
[ENA]
¡û
>W2010637196
JABVBB010000021
Alphaproteobacteria
Sulfitobacter sp. S0837 [JABVBB]
171038
171114
+
Arg
CCG
[ENA]
¡û
>W2011555410
SELP01000004
Alphaproteobacteria
Loktanella sp. IMCC34160 [SELP]
482286
482362
+
Arg
CCG
[ENA]
¡û
>W2011617042
SKCI01000001
Alphaproteobacteria
Marimonas sp. GH1-19 [SKCI]
1300336
1300412
+
Arg
CCG
[ENA]
¡û
>W2011961873
VANS01000001
Alphaproteobacteria
Sulfitobacter sp. HSMS-29 [VANS]
682901
682977
+
Arg
CCG
[ENA]
¡û
>W2011971722
VCDK01000003
Alphaproteobacteria
Shimia sp. WX04 [VCDK]
216245
216169
-
Arg
CCG
[ENA]
¡û
>W2012039933
VINQ01000001
Alphaproteobacteria
Aquicoccus porphyridii L1 8-17 [VINQ]
420194
420118
-
Arg
CCG
[ENA]
¡û
>W2110566665
JAGQDH010000024
Alphaproteobacteria
Roseovarius sp. SHN287 [JAGQDH]
1700
1624
-
Arg
CCG
[ENA]
¡û
>W2110654413
JAHVJR010000001
Alphaproteobacteria
Vannielia litorea DP2N28-3 [JAHVJR]
1478223
1478147
-
Arg
CCG
[ENA]
¡û
>W2110654458
JAHVJS010000001
Alphaproteobacteria
Vannielia litorea DP2N28-4 [JAHVJS]
1478223
1478147
-
Arg
CCG
[ENA]
¡û
>W2110654576
JAHVJV010000001
Alphaproteobacteria
Vannielia litorea DP3N21-11 [JAHVJV]
1094381
1094457
+
Arg
CCG
[ENA]
¡û
>C201057945
CP034348
Alphaproteobacteria
Roseovarius sp. MME-070 [CP034348]
1804358
1804282
-
Arg
CCG
-
¡û
>C231127700
CP072613
Alphaproteobacteria
Sulfitobacter sp. CB2047 [CP072613]
1973379
1973303
-
Arg
CCG
-
¡û
>C231169664
CP081126
Alphaproteobacteria
Sulfitobacter sp. W002 [CP081126]
2008086
2008010
-
Arg
CCG
-
¡û
>C231169712
CP081130
Alphaproteobacteria
Sulfitobacter sp. W074 [CP081130]
2063174
2063098
-
Arg
CCG
-
¡û
>C231201452
CP084959
Alphaproteobacteria
Sulfitobacter pontiacus DSM 110277 [CP084959]
1782908
1782984
+
Arg
CCG
-
¡û
>W2110761667
QTNQ01000024
Alphaproteobacteria
Vannielia litorea EBW16 [QTNQ]
47204
47280
+
Arg
CCG
[ENA]
¡û
>C241131169
CP048788
Alphaproteobacteria
Roseobacter ponti DSM 106830 [CP048788]
1842021
1841945
-
Arg
CCG
-
¡û
>C241135962
CP049344
Alphaproteobacteria
Sulfitobacter pontiacus S1704 [CP049344]
1834449
1834525
+
Arg
CCG
-
¡û
>C241329052
CP136692
Alphaproteobacteria
Sulfitobacter sp. LC.270.F.C4 [CP136692]
1927468
1927544
+
Arg
CCG
-
¡û
>W1511518802
JXYH01000057
Alphaproteobacteria
Aestuariivita boseongensis BS-B2 [JXYH]
8204
8128
-
Arg
CCG
[ENA]
¡û
>W1511564702
LADY01000053
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
95063
94987
-
Arg
CCG
[ENA]
¡û
>W1610014775
AONH01000007
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
306257
306333
+
Arg
CCG
[ENA]
¡û
>W1610661093
LJSU01000009
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
147210
147286
+
Arg
CCG
[ENA]
¡û
>W1610984388
LWFD01000076
Alphaproteobacteria
Sulfitobacter sp. HI0054 [LWFD]
914
838
-
Arg
CCG
[ENA]
¡û
>W1710011666
AONH01000007
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
306257
306333
+
Arg
CCG
[ENA]
¡û
>W1710518490
FNEB01000001
Alphaproteobacteria
Lutimaribacter saemankumensis [FNEB]
151070
151146
+
Arg
CCG
[ENA]
¡û
>W1710524226
FNIO01000002
Alphaproteobacteria
Lutimaribacter pacificus [FNIO]
359921
359997
+
Arg
CCG
[ENA]
¡û
>W1710543751
FOAG01000014
Alphaproteobacteria
Roseovarius azorensis [FOAG]
55870
55794
-
Arg
CCG
[ENA]
¡û
>W1710562792
FOPF01000001
Alphaproteobacteria
Palleronia marisminoris [FOPF]
44792
44868
+
Arg
CCG
[ENA]
¡û
>W1710589250
FQZZ01000005
Alphaproteobacteria
Lutimaribacter pacificus [FQZZ]
73145
73221
+
Arg
CCG
[ENA]
¡û
>W1710594757
FSRL01000001
Alphaproteobacteria
Vannielia litorea litoreus [FSRL]
1313596
1313672
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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