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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167149 (72 seq.)
>W1710853006
LLWF02000043
Alphaproteobacteria
Roseomonas mucosa [LLWF]
8593
8669
+
Arg
CCT
[ENA]
¡û
>W1711511624
MLCO01000221
Alphaproteobacteria
Pseudoroseomonas deserti M3 [MLCO]
3562
3637
+
Arg
CCT
[ENA]
¡û
>C171039532
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
844577
844650
+
Arg
CCT
-
¡û
>WENV180013468
FMSI01088074
[FMSI] soil metagenome; Soil
408
482
+
Arg
CCT
[ENA]
¡û
>W141276646
JADY01000009
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
88584
88511
-
Arg
CCT
[ENA]
¡û
>WENV170018701
BBPD01000429
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
5183
5256
+
Arg
CCT
[ENA]
¡û
>WENV170018879
BBPD01001788
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
7865
7938
+
Arg
CCT
[ENA]
¡û
>WENV170020081
BBPE01002804
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
633
560
-
Arg
CCT
[ENA]
¡û
>WENV170020213
BBPE01004243
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
74
1
-
Arg
CCT
[ENA]
¡û
>WENV170020672
BBPE01017557
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
10
86
+
Arg
CCT
[ENA]
¡û
>WENV170709943
LNFM01000957
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
53372
53297
-
Arg
CCT
[ENA]
¡û
>WENV170711147
LNFM01003748
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
21993
22069
+
Arg
CCT
[ENA]
¡û
>WENV170711153
LNFM01003770
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10176
10100
-
Arg
CCT
[ENA]
¡û
>WENV170713762
LNFM01041188
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1796
1869
+
Arg
CCT
[ENA]
¡û
>C181102045
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
1908358
1908284
-
Arg
CCT
-
¡û
>W141558732
JHWD01000023
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
57815
57889
+
Arg
CCT
[ENA]
¡û
>W141816683
JQKB01000009
Alphaproteobacteria
Belnapia moabensis DSM 16746 [JQKB]
84203
84279
+
Arg
CCT
[ENA]
¡û
>W1910913941
NHRY01000054
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
46534
46461
-
Arg
CCT
[ENA]
¡û
>W1810684774
QKYU01000017
Alphaproteobacteria
Humitalea rosea DSM 24525 [QKYU]
49312
49236
-
Arg
CCT
[ENA]
¡û
>W1810692341
QLIX01000016
Alphaproteobacteria
Roseicella frigidaeris DB-1506 [QLIX]
57806
57882
+
Arg
CCT
[ENA]
¡û
>PL201000223
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 plasmid: [CP015583]
844577
844650
+
Arg
CCT
[ENA]
¡û
>W2010320813
CACSJM010000010
Alphaproteobacteria
Roseomonas sp. 18066 [CACSJM]
35050
35123
+
Arg
CCT
[ENA]
¡û
>W2010567940
JAATJR010000001
Alphaproteobacteria
Roseomonas frigidaquae JCM [JAATJR]
539674
539598
-
Arg
CCT
[ENA]
¡û
>W2010573859
JAAVNE010000075
Alphaproteobacteria
Roseomonas sp. BU-1 [JAAVNE]
8173
8097
-
Arg
CCT
[ENA]
¡û
>W2010575231
JAAVTX010000001
Alphaproteobacteria
Roseomonas frigidaquae JCM 15073 [JAAVTX]
539674
539598
-
Arg
CCT
[ENA]
¡û
>W2010597949
JABFHG010000006
Alphaproteobacteria
Roseicella sp. DB1501 [JABFHG]
42569
42493
-
Arg
CCT
[ENA]
¡û
>W2010724494
JACIDJ010000001
Alphaproteobacteria
Roseococcus suduntuyensis DSM 19979 [JACIDJ]
13599
13526
-
Arg
CCT
[ENA]
¡û
>W2010966962
NHRY01000054
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
46534
46461
-
Arg
CCT
[ENA]
¡û
>W2011604026
SJDM01000033
Alphaproteobacteria
Crenalkalicoccus roseus YIM 78023 [SJDM]
78
2
-
Arg
CCT
[ENA]
¡û
>W2011615225
SJXD01000030
Alphaproteobacteria
Roseococcus sp. SYP-B2431 [SJXD]
131237
131313
+
Arg
CCT
[ENA]
¡û
>W2011616369
SKBM01000012
Alphaproteobacteria
Paracraurococcus sp. NE82 [SKBM]
12713
12637
-
Arg
CCT
[ENA]
¡û
>W2011639101
SMOA01000003
Alphaproteobacteria
Paracraurococcus ruber JCM9931 [SMOA]
61001
60925
-
Arg
CCT
[ENA]
¡û
>W2011639917
SMSJ01000011
Alphaproteobacteria
Dankookia rubra JCM30602 [SMSJ]
94446
94519
+
Arg
CCT
[ENA]
¡û
>W2011838982
UGVN01000001
Alphaproteobacteria
Roseomonas mucosa NCTC13291 [UGVN]
2438385
2438459
+
Arg
CCT
[ENA]
¡û
>W2011839062
UGVO01000001
Alphaproteobacteria
Roseomonas gilardii subsp. rosea NCTC13290 [UGVO]
2931429
2931356
-
Arg
CCT
[ENA]
¡û
>W2012004738
VEIX01000005
Alphaproteobacteria
Roseomonas gilardii DE0006 [VEIX]
277072
277145
+
Arg
CCT
[ENA]
¡û
>W2012152290
VUKA01000018
Alphaproteobacteria
Roseomonas oryzae KCTC 42542 [VUKA]
34885
34958
+
Arg
CCT
[ENA]
¡û
>W2110137939
JAAEDH010000013
Alphaproteobacteria
Roseomonas arctica LMG 28251 [JAAEDH]
25376
25300
-
Arg
CCT
[ENA]
¡û
>W2110140471
JAAGBB010000052
Alphaproteobacteria
Roseomonas hellenica LMG 31523 [JAAGBB]
2064
2140
+
Arg
CCT
[ENA]
¡û
>W2110264476
JACTNG010000007
Alphaproteobacteria
Roseomonas sp. 573 [JACTNG]
231274
231201
-
Arg
CCT
[ENA]
¡û
>W2110265976
JACTVA010000024
Alphaproteobacteria
Roseomonas aerophila NBRC 108923 [JACTVA]
27188
27261
+
Arg
CCT
[ENA]
¡û
>W2110315396
JADFCQ010000004
Alphaproteobacteria
Acetobacteraceae bacterium H6797 [JADFCQ]
462369
462293
-
Arg
CCT
[ENA]
¡û
>W2110445279
JAERQM010000001
Alphaproteobacteria
Roseomonas sp. ROY-5-3 [JAERQM]
1179386
1179310
-
Arg
CCT
[ENA]
¡û
>W2110454189
JAETWB010000022
Alphaproteobacteria
Belnapia sp. T18 [JAETWB]
4169
4093
-
Arg
CCT
[ENA]
¡û
>W2110455930
JAEUXJ010000024
Alphaproteobacteria
Belnapia sp. T6 [JAEUXJ]
38749
38825
+
Arg
CCT
[ENA]
¡û
>W2110492551
JAFEUU010000002
Alphaproteobacteria
Rubritepida sp. SYSU D01096 [JAFEUU]
290453
290529
+
Arg
CCT
[ENA]
¡û
>W2110494782
JAFFQX010000011
Alphaproteobacteria
Roseococcus suduntuyensis SHET [JAFFQX]
13504
13431
-
Arg
CCT
[ENA]
¡û
>W2110494832
JAFFQY010000015
Alphaproteobacteria
Roseococcus thiosulfatophilus RB-3 [JAFFQY]
20716
20789
+
Arg
CCT
[ENA]
¡û
>W2110518492
JAFNJS010000010
Alphaproteobacteria
Roseomonas tokyonensis K-20 [JAFNJS]
4064
3988
-
Arg
CCT
[ENA]
¡û
>W2110591803
JAHCDA010000001
Alphaproteobacteria
Roseococcus sp. XZZS9 [JAHCDA]
1013302
1013378
+
Arg
CCT
[ENA]
¡û
>W2110592158
JAHCDM010000007
Alphaproteobacteria
Roseococcus sp. SDR [JAHCDM]
45140
45216
+
Arg
CCT
[ENA]
¡û
>W2110639929
JAHRCU010000007
Alphaproteobacteria
Roseococcus sp. SDR [JAHRCU]
45140
45216
+
Arg
CCT
[ENA]
¡û
>C211143876
CP061177
Alphaproteobacteria
Roseomonas sp. 546 [CP061177]
622772
622699
-
Arg
CCT
-
¡û
>C211152119
CP061718
Alphaproteobacteria
Roseococcus sp. NIBR12 [CP061718]
2074947
2074874
-
Arg
CCT
-
¡û
>W2110716838
JAJAQI010000065
Alphaproteobacteria
Roseicella sp. GB24 [JAJAQI]
18406
18482
+
Arg
CCT
[ENA]
¡û
>C231032815
CP025061
Alphaproteobacteria
Roseomonas mucosa PG [CP025061]
1627281
1627355
+
Arg
CCT
-
¡û
>C231202879
CP085081
Alphaproteobacteria
Sediminicoccus rosea KRV36 [CP085081]
4399602
4399529
-
Arg
CCT
-
¡û
>C231361846
CP095554
Alphaproteobacteria
Roseomonas gilardii subsp. gilardii ATCC 49956 [CP095554]
1868436
1868509
+
Arg
CCT
-
¡û
>W2110754269
NRSG01000004
Alphaproteobacteria
Paracraurococcus ruber DSM 15382 [NRSG]
61007
60931
-
Arg
CCT
[ENA]
¡û
>W2110762759
RCVQ01000002
Alphaproteobacteria
Roseomonas sp. KE0001 [RCVQ]
461681
461757
+
Arg
CCT
[ENA]
¡û
>C231569988
CP115851
Alphaproteobacteria
Roseomonas cervicalis PL22-11A [CP115851]
3411909
3411836
-
Arg
CCT
-
¡û
>C241086887
CP044117
Alphaproteobacteria
Roseomonas mucosa FDAARGOS_658 [CP044114, CP044115, CP044116, CP044117]
483168
483242
+
Arg
CCT
-
¡û
>W10119181
ADVL01000791
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
32803
32730
-
Arg
CCT
[ENA]
¡û
>W2130010176
JAAGBC010000134
Alphaproteobacteria
Roseomonas hellenica LMG 31524 [JAAGBC]
2019
2095
+
Arg
CCT
[ENA]
¡û
>W1511352862
JROR01000001
Alphaproteobacteria
Belnapia sp. F-4-1 [JROR]
187152
187076
-
Arg
CCT
[ENA]
¡û
>W11125401
ADVL01000791
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
32803
32730
-
Arg
CCT
[ENA]
¡û
>W121009590
AGEZ01000154
Alphaproteobacteria
Acetobacteraceae bacterium AT-5844 [AGEZ]
16131
16058
-
Arg
CCT
[ENA]
¡û
>W121113865
ALOX01000118
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
8330
8404
+
Arg
CCT
[ENA]
¡û
>W1610716120
LLWF01000017
Alphaproteobacteria
Roseomonas mucosa [LLWF]
8264
8340
+
Arg
CCT
[ENA]
¡û
>W1710084283
BDLP01000158
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
5562
5488
-
Arg
CCT
[ENA]
¡û
>W1710510471
FMXZ01000002
Alphaproteobacteria
Belnapia rosea [FMXZ]
448749
448825
+
Arg
CCT
[ENA]
¡û
>W1710513103
FMZX01000009
Alphaproteobacteria
Belnapia rosea [FMZX]
125535
125459
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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