This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167177 (39 seq.)
>WENV170464966
CEVD01335417
[CEVD] marine metagenome genome assembly TARA_123_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
170
96
-
Met
CAT
[ENA]
¡û
>WENV170807186
MDSW01094370
[MDSW] marine metagenome; seawater
2466
2390
-
Met
CAT
[ENA]
¡û
>W141776011
JOKH01000002
Gammaproteobacteria
Endozoicomonas numazuensis [JOKH]
561762
561838
+
Met
CAT
[ENA]
¡û
>W141776012
JOKH01000002
Gammaproteobacteria
Endozoicomonas numazuensis [JOKH]
561886
561962
+
Met
CAT
[ENA]
¡û
>W141776074
JOKH01000021
Gammaproteobacteria
Endozoicomonas numazuensis [JOKH]
4094
4170
+
Met
CAT
[ENA]
¡û
>W1910462927
FWPT01000013
Gammaproteobacteria
Parendozoicomonas haliclonae [FWPT]
117705
117629
-
Met
CAT
[ENA]
¡û
>W1910462929
FWPT01000013
Gammaproteobacteria
Parendozoicomonas haliclonae [FWPT]
117446
117370
-
Met
CAT
[ENA]
¡û
>W1910462931
FWPT01000013
Gammaproteobacteria
Parendozoicomonas haliclonae [FWPT]
117198
117122
-
Met
CAT
[ENA]
¡û
>W2010409652
FWPT01000013
Gammaproteobacteria
Parendozoicomonas haliclonae [FWPT]
117705
117629
-
fMet
CAT
[ENA]
¡û
>W2010409654
FWPT01000013
Gammaproteobacteria
Parendozoicomonas haliclonae [FWPT]
117446
117370
-
fMet
CAT
[ENA]
¡û
>W2010409656
FWPT01000013
Gammaproteobacteria
Parendozoicomonas haliclonae [FWPT]
117198
117122
-
fMet
CAT
[ENA]
¡û
>C231176291
CP082909
Gammaproteobacteria
Endozoicomonas sp. 4G [CP082909]
3032663
3032739
+
fMet
CAT
-
¡û
>C231176292
CP082909
Gammaproteobacteria
Endozoicomonas sp. 4G [CP082909]
3032787
3032863
+
fMet
CAT
-
¡û
>C241242371
CP120717
Gammaproteobacteria
Endozoicomonas sp. 8E [CP120717]
4266531
4266607
+
fMet
CAT
-
¡û
>C241242372
CP120717
Gammaproteobacteria
Endozoicomonas sp. 8E [CP120717]
4266654
4266730
+
fMet
CAT
-
¡û
>C241242373
CP120717
Gammaproteobacteria
Endozoicomonas sp. 8E [CP120717]
4266777
4266853
+
fMet
CAT
-
¡û
>C241242374
CP120717
Gammaproteobacteria
Endozoicomonas sp. 8E [CP120717]
4266900
4266976
+
fMet
CAT
-
¡û
>W1610576444
LASA01000119
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
14
90
+
Met
CAT
[ENA]
¡û
>W1610576445
LASA01000119
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
140
216
+
Met
CAT
[ENA]
¡û
>W1610576446
LASA01000119
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
266
342
+
Met
CAT
[ENA]
¡û
>W1610576447
LASA01000119
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
391
467
+
Met
CAT
[ENA]
¡û
>W1610576477
LASA01000161
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
21015
21091
+
Met
CAT
[ENA]
¡û
>W1610576478
LASA01000161
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
21142
21218
+
Met
CAT
[ENA]
¡û
>W1610576479
LASA01000161
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
21269
21345
+
Met
CAT
[ENA]
¡û
>W1610576480
LASA01000161
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
21396
21472
+
Met
CAT
[ENA]
¡û
>W1610576482
LASA01000161
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
21648
21724
+
Met
CAT
[ENA]
¡û
>W1610576483
LASA01000161
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
21775
21851
+
Met
CAT
[ENA]
¡û
>W1610576484
LASA01000161
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
21901
21977
+
Met
CAT
[ENA]
¡û
>W1610576514
LASA01000298
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
210
134
-
Met
CAT
[ENA]
¡û
>W1610576516
LASA01000299
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
771
695
-
Met
CAT
[ENA]
¡û
>W1610576517
LASA01000299
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
519
443
-
Met
CAT
[ENA]
¡û
>W1610576518
LASA01000299
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
392
316
-
Met
CAT
[ENA]
¡û
>W1610576519
LASA01000299
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
265
189
-
Met
CAT
[ENA]
¡û
>W1610576601
LASB01002253
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
46
122
+
Met
CAT
[ENA]
¡û
>W1610576602
LASB01002253
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
171
247
+
Met
CAT
[ENA]
¡û
>W1710695007
LASA01000299
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
392
316
-
Met
CAT
[ENA]
¡û
>W1710695008
LASA01000299
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
265
189
-
Met
CAT
[ENA]
¡û
>W1710695090
LASB01002253
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
46
122
+
Met
CAT
[ENA]
¡û
>W1710695091
LASB01002253
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
171
247
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK