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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167505 (45 seq.)
>W1710861909
LMDZ01000005
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
765196
765120
-
Ile
GAT
[ENA]
¡û
>W1710862178
LMEE01000001
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
1966885
1966961
+
Ile
GAT
[ENA]
¡û
>W1710866768
LMHT01000001
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
79074
78998
-
Ile
GAT
[ENA]
¡û
>W1710867712
LMIM01000008
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
3534
3458
-
Ile
GAT
[ENA]
¡û
>W1711074229
LSJI01000180
Alphaproteobacteria
Phenylobacterium sp. CCH9-H3 [LSJI]
150392
150468
+
Ile
GAT
[ENA]
¡û
>W1711075188
LSKE01000209
Alphaproteobacteria
Phenylobacterium sp. CCH12-B4 [LSKE]
30455
30531
+
Ile
GAT
[ENA]
¡û
>WENV180022512
FTGI01001040
[FTGI] metagenome; soil
289
365
+
Ile
GAT
[ENA]
¡û
>WENV180024951
FTIL01003213
[FTIL] metagenome; soil
350
426
+
Ile
GAT
[ENA]
¡û
>WENV180026752
FTIU01079775
[FTIU] metagenome; soil
2379
2303
-
Ile
GAT
[ENA]
¡û
>WENV180028287
FTJA01049244
[FTJA] metagenome; soil
211
135
-
Ile
GAT
[ENA]
¡û
>WENV180032078
FTJU01063916
[FTJU] metagenome; soil
1030
954
-
Ile
GAT
[ENA]
¡û
>WENV181193136
OEPS011509224
[OEPS] soil metagenome; soil
109
33
-
Ile
GAT
[ENA]
¡û
>WENV181222473
OFDB01000268
[OFDB] metagenome; soil
2135
2211
+
Ile
GAT
[ENA]
¡û
>WENV181227662
OFDN01027143
[OFDN] hot springs metagenome; Water
1510
1434
-
Ile
GAT
[ENA]
¡û
>WENV181732450
OGQD01038465
[OGQD] human gut metagenome; faeces
720
644
-
Ile
GAT
[ENA]
¡û
>WENV182543906
OJBD01000924
[OJBD] seawater metagenome; Sea water
3558
3482
-
Ile
GAT
[ENA]
¡û
>C08007880
CP000747
Alphaproteobacteria
Phenylobacterium zucineum HLK1 [CP000747]
1274039
1274115
+
Ile
GAT
[Ensembl]
¡û
>WENV183697731
OUNK010041381
[OUNK] metagenome; soil
621
545
-
Ile
GAT
[ENA]
¡û
>WENV183726343
PJQF01169026
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
190
114
-
Ile
GAT
[ENA]
¡û
>WENV183734704
PJTZ01046065
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
168
92
-
Ile
GAT
[ENA]
¡û
>WENV170004186
AGTN01591851
[AGTN] bioreactor metagenome; poplar biomass
323
247
-
Ile
GAT
[ENA]
¡û
>WENV170151779
CEOD01039094
[CEOD] marine metagenome genome assembly TARA_036_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
406
330
-
Ile
GAT
[ENA]
¡û
>WENV170379862
CETV01240628
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
226
302
+
Ile
GAT
[ENA]
¡û
>WENV170645978
JQGF01002913
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
340
416
+
Ile
GAT
[ENA]
¡û
>WENV170708143
LNAP01053126
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1116
1040
-
Ile
GAT
[ENA]
¡û
>WENV170708187
LNAP01056712
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1012
936
-
Ile
GAT
[ENA]
¡û
>C181179040
CP029479
Alphaproteobacteria
Phenylobacterium parvum HYN0004 [CP029479]
1893742
1893666
-
Ile
GAT
-
¡û
>W1810594036
QFYP01000001
Alphaproteobacteria
Phenylobacterium hankyongense HKS-05 [QFYP]
167101
167025
-
Ile
GAT
[ENA]
¡û
>W1810594064
QFYQ01000001
Alphaproteobacteria
Phenylobacterium soli LX32 [QFYQ]
3186077
3186001
-
Ile
GAT
[ENA]
¡û
>W1810594133
QFYR01000012
Alphaproteobacteria
Phenylobacterium deserti YIM 73061 [QFYR]
453
377
-
Ile
GAT
[ENA]
¡û
>W1810594177
QFYS01000018
Alphaproteobacteria
Phenylobacterium kunshanense BUT-10 [QFYS]
1898
1974
+
Ile
GAT
[ENA]
¡û
>W2010724577
JACIDK010000019
Alphaproteobacteria
Phenylobacterium haematophilum DSM 21793 [JACIDK]
2151
2227
+
Ile
GAT
[ENA]
¡û
>W2010741410
JACJMQ010000001
Alphaproteobacteria
Caulobacter sp. H1 [JACJMQ]
2059073
2059149
+
Ile
GAT
[ENA]
¡û
>W2010781524
LMUL01000014
Alphaproteobacteria
Caulobacter sp. S45 [LMUL]
2593909
2593985
+
Ile
GAT
[ENA]
¡û
>W2110569098
JAGSGD010000001
Alphaproteobacteria
Phenylobacterium sp. 20VBR1 [JAGSGD]
1637313
1637389
+
Ile
GAT
[ENA]
¡û
>C231434437
CP101283
Alphaproteobacteria
Phenylobacterium sp. LH3H17 [CP101283]
1552931
1553007
+
Ile
GAT
-
¡û
>C231561330
CP114599
Alphaproteobacteria
Phenylobacterium sp. NIBR 498073 [CP114599]
3946338
3946262
-
Ile
GAT
-
¡û
>C231561336
CP114599
Alphaproteobacteria
Phenylobacterium sp. NIBR 498073 [CP114599]
3192176
3192100
-
Ile
GAT
-
¡û
>C241358332
CP140945
Alphaproteobacteria
Sinorhizobium meliloti ml66 [CP140945]
3409968
3409892
-
Ile
GAT
-
¡û
>W1610724255
LMDZ01000005
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
765196
765120
-
Ile
GAT
[ENA]
¡û
>W1610724524
LMEE01000001
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
1966885
1966961
+
Ile
GAT
[ENA]
¡û
>W1610729114
LMHT01000001
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
79074
78998
-
Ile
GAT
[ENA]
¡û
>W1610730058
LMIM01000008
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
3534
3458
-
Ile
GAT
[ENA]
¡û
>W1610913534
LSJI01000180
Alphaproteobacteria
Phenylobacterium sp. CCH9-H3 [LSJI]
150392
150468
+
Ile
GAT
[ENA]
¡û
>W1610914493
LSKE01000209
Alphaproteobacteria
Phenylobacterium sp. CCH12-B4 [LSKE]
30455
30531
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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