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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167647 (131 seq.)
>W1710777072
LJAJ01000025
Bacillota
Geobacillus sp. BCO2 [LJAJ]
32925
33001
+
Pro
GGG
[ENA]
¡û
>W1710836299
LLKS01000052
Bacillota
Geobacillus sp. Sah69 [LLKS]
13328
13252
-
Pro
GGG
[ENA]
¡û
>W1711003763
LQIE01000109
Bacillota
Geobacillus stearothermophilus [LQIE]
15651
15575
-
Pro
GGG
[ENA]
¡û
>W1711020841
LQYV01000016
Bacillota
Geobacillus stearothermophilus [LQYV]
2631
2555
-
Pro
GGG
[ENA]
¡û
>W1711021087
LQYX01000116
Bacillota
Geobacillus sp. B4113_201601 [LQYX]
4323
4399
+
Pro
GGG
[ENA]
¡û
>W1711021097
LQYY01000059
Bacillota
Geobacillus stearothermophilus [LQYY]
12035
11959
-
Pro
GGG
[ENA]
¡û
>W1711116888
LUCR01000071
Bacillota
Geobacillus stearothermophilus [LUCR]
3320
3396
+
Pro
GGG
[ENA]
¡û
>W1711144165
LVHZ01000011
Bacillota
Geobacillus stearothermophilus 15 [LVHZ]
11425
11349
-
Pro
GGG
[ENA]
¡û
>W1711178931
LWHE01000108
Bacillota
Geobacillus subterraneus [LWHE]
10206
10130
-
Pro
GGG
[ENA]
¡û
>W131205154
ATCO01000042
Bacillota
Geobacillus sp. WSUCF1 [ATCO]
9426
9502
+
Pro
GGG
[ENA]
¡û
>W1711351606
MDCP01000175
Bacillota
Geobacillus thermoleovorans [MDCP]
9912
9988
+
Pro
GGG
[ENA]
¡û
>W131241865
BASG01000028
Bacillota
Geobacillus kaustophilus GBlys [BASG]
18990
18914
-
Pro
GGG
[ENA]
¡û
>W1711657870
MQMG01000020
Bacillota
Geobacillus proteiniphilus 1017 [MQMG]
37333
37409
+
Pro
GGG
[ENA]
¡û
>W1711775126
MVKA01000002
Bacillota
Geobacillus sp. LEMMY01 [MVKA]
192243
192319
+
Pro
GGG
[ENA]
¡û
>W1711926620
NADR01000013
Bacillota
Geobacillus sp. 46C-IIa [NADR]
71809
71886
+
Pro
GGG
[ENA]
¡û
>W1711926712
NADS01000034
Bacillota
Geobacillus sp. 47C-IIb [NADS]
14076
14152
+
Pro
GGG
[ENA]
¡û
>W1711930386
NAGD01000043
Bacillota
Geobacillus thermoleovorans thermocatenulatus [NAGD]
16687
16611
-
Pro
GGG
[ENA]
¡û
>W1711930446
NAGE01000028
Bacillota
Geobacillus zalihae thermocatenulatus [NAGE]
21163
21239
+
Pro
GGG
[ENA]
¡û
>W1711930525
NAGF01000031
Bacillota
Geobacillus zalihae thermocatenulatus [NAGF]
18357
18281
-
Pro
GGG
[ENA]
¡û
>C171056341
CP017071
Bacillota
Geobacillus thermoleovorans FJAT-2391 [CP017071]
2114904
2114980
+
Pro
GGG
-
¡û
>C171066158
CP017694
Bacillota
Geobacillus thermodenitrificans KCTC3902 [CP017694]
3217392
3217316
-
Pro
GGG
-
¡û
>C171103028
CP020030
Bacillota
Geobacillus thermodenitrificans T12 [CP020030]
2255789
2255865
+
Pro
GGG
-
¡û
>C009959
BA000043
Bacillota
Geobacillus kaustophilus HTA426 [BA000043]
2168611
2168684
+
Pro
GGG
[Ensembl]
¡û
>C010194
CP000557
Bacillota
Geobacillus thermodenitrificans NG80-2 [CP000557]
2144557
2144630
+
Pro
GGG
[Ensembl]
¡û
>WENV180396629
OBPV01037756
[OBPV] marine metagenome; ENVO:00002010
199
273
+
Pro
GGG
[ENA]
¡û
>W141090605
AUXP01000048
Bacillota
Geobacillus sp. A8 [AUXP]
18461
18537
+
Pro
GGG
[ENA]
¡û
>W08011419
ABVH01000006
Bacillota
Geobacillus thermodenitrificans G11MC16 [ABVH]
62083
62007
-
Pro
GGG
[ENA]
¡û
>W141186794
AYKT01000016
Bacillota
Geobacillus thermodenitrificans subsp. thermodenitrificans DSM 465 [AYKT]
55664
55740
+
Pro
GGG
[ENA]
¡û
>W141193644
AYSF01000029
Bacillota
Geobacillus sp. MAS1 [AYSF]
3035
2959
-
Pro
GGG
[ENA]
¡û
>W141231305
BATY01000101
Bacillota
Geobacillus thermoleovorans B23 [BATY]
19134
19058
-
Pro
GGG
[ENA]
¡û
>W141238026
BBJV01000048
Bacillota
Geobacillus kaustophilus NBRC 102445 [BBJV]
13952
13876
-
Pro
GGG
[ENA]
¡û
>W141284340
JALS01000093
Bacillota
Geobacillus stearothermophilus ATCC 7953 [JALS]
11364
11288
-
Pro
GGG
[ENA]
¡û
>WENV170329080
CESV01074678
[CESV] marine metagenome genome assembly TARA_100_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1406
1332
-
Pro
GGG
[ENA]
¡û
>W141462655
JFHZ01000022
Bacillota
Geobacillus thermocatenulatus GS-1 [JFHZ]
31638
31714
+
Pro
GGG
[ENA]
¡û
>W141491717
JGCJ01000018
Bacillota
Geobacillus sp. FW23 [JGCJ]
2106
2030
-
Pro
GGG
[ENA]
¡û
>C181020045
CP016552
Bacillota
Geobacillus stearothermophilus DSM 458 [CP016552]
1994615
1994691
+
Pro
GGG
-
¡û
>C181027013
CP017690
Bacillota
Geobacillus thermodenitrificans ID-1 [CP017690]
3525969
3525893
-
Pro
GGG
-
¡û
>C181027075
CP017692
Bacillota
Geobacillus lituanicus N-3 [CP017692]
720826
720902
+
Pro
GGG
-
¡û
>C181030363
CP018058
Bacillota
Geobacillus thermocatenulatus KCTC 3921 [CP018058]
1794233
1794157
-
Pro
GGG
-
¡û
>C191029845
CP025074
Bacillota
[Bacillus] caldolyticus NEB414 [CP025074]
3423298
3423222
-
Pro
GGG
-
¡û
>C191162584
CP038860
Bacillota
Geobacillus kaustophilus NBRC 102445 [CP038860]
2755486
2755562
+
Pro
GGG
-
¡û
>W141556921
JHUR01000044
Bacillota
Geobacillus sp. CAMR12739 [JHUR]
1005
1081
+
Pro
GGG
[ENA]
¡û
>W141556991
JHUS01000049
Bacillota
Geobacillus sp. CAMR5420 [JHUS]
3413
3489
+
Pro
GGG
[ENA]
¡û
>W09119883
ACED01000032
Bacillota
Geobacillus sp. Y412MC61 [ACED]
27185
27261
+
Pro
GGG
[ENA]
¡û
>W09132052
ACNM01000010
Bacillota
Geobacillus sp. Y412MC52 [ACNM]
1966
1890
-
Pro
GGG
[ENA]
¡û
>W141807323
JPOI01000001
Bacillota
Geobacillus vulcani PSS1 [JPOI]
2314347
2314271
-
Pro
GGG
[ENA]
¡û
>W141811365
JPYA01000048
Bacillota
Geobacillus icigianus G1w1 [JPYA]
2539
2615
+
Pro
GGG
[ENA]
¡û
>W141811466
JPYV01000116
Bacillota
Geobacillus stearothermophilus [JPYV]
15408
15484
+
Pro
GGG
[ENA]
¡û
>W141812315
JQCS01000081
Bacillota
Geobacillus stearothermophilus [JQCS]
16673
16749
+
Pro
GGG
[ENA]
¡û
>W141819906
JQMN01000001
Bacillota
Geobacillus subterraneus PSS2 [JQMN]
1902875
1902799
-
Pro
GGG
[ENA]
¡û
>C141004613
CP006254
Bacillota
Geobacillus genomosp. 3 JF8 [CP006254]
2047474
2047550
+
Pro
GGG
[Ensembl]
¡û
>W1910891427
NEWK01000001
Bacillota
Geobacillus thermocatenulatus BGSC 93A1 [NEWK]
1500120
1500044
-
Pro
GGG
[ENA]
¡û
>W1910891526
NEWL01000005
Bacillota
Geobacillus uzenensis BGSC 92A1 [NEWL]
169377
169301
-
Pro
GGG
[ENA]
¡û
>W1910930648
NISS01000001
Bacillota
Geobacillus sp. FJAT-46040 [NISS]
913027
912951
-
Pro
GGG
[ENA]
¡û
>W1810143529
PIJF01000010
Bacillota
Geobacillus sp. WSUCF-018B [PIJF]
49784
49860
+
Pro
GGG
[ENA]
¡û
>W1810143625
PIJG01000034
Bacillota
Geobacillus sp. Manikaran-105 [PIJG]
19036
19112
+
Pro
GGG
[ENA]
¡û
>W1810143711
PIJH01000009
Bacillota
Geobacillus thermodenitrificans JSC_T9a [PIJH]
22121
22045
-
Pro
GGG
[ENA]
¡û
>W1810154831
PIZS01000045
Bacillota
Geobacillus thermodenitrificans OS27 [PIZS]
26176
26100
-
Pro
GGG
[ENA]
¡û
>C151039561
CP008903
Bacillota
Geobacillus sp. LC300 [CP008903]
457056
457132
+
Pro
GGG
-
¡û
>C151040602
CP008934
Bacillota
Geobacillus stearothermophilus 10 [CP008934]
3158000
3157924
-
Pro
GGG
-
¡û
>C151086920
CP011832
Bacillota
Geobacillus sp. 12AMOR1 [CP011832]
2078743
2078819
+
Pro
GGG
[Ensembl]
¡û
>W2010699039
JACHER010000036
Bacillota
Geobacillus subterraneus DSM 23066 [JACHER]
2063
2139
+
Pro
GGG
[ENA]
¡û
>W2010702480
JACHHJ010000001
Bacillota
Geomicrobium halophilum DSM 21769 [JACHHJ]
1530076
1530152
+
Pro
GGG
[ENA]
¡û
>W2010786521
LUCS01000028
Bacillota
Geobacillus stearothermophilus GS8 [LUCS]
854646
854570
-
Pro
GGG
[ENA]
¡û
>W2010892465
MPSP01000001
Bacillota
Geobacillus sp. TFV-3 [MPSP]
1434886
1434810
-
Pro
GGG
[ENA]
¡û
>W2010956297
NEWK01000001
Bacillota
Geobacillus thermocatenulatus BGSC 93A1 [NEWK]
1500120
1500044
-
Pro
GGG
[ENA]
¡û
>W2010956396
NEWL01000005
Bacillota
Geobacillus uzenensis BGSC 92A1 [NEWL]
169377
169301
-
Pro
GGG
[ENA]
¡û
>W2010980250
NISS01000001
Bacillota
Geobacillus sp. FJAT-46040 [NISS]
913027
912951
-
Pro
GGG
[ENA]
¡û
>W2011402663
RCTG01000094
Bacillota
Geobacillus stearothermophilus FHS-PHGT51 [RCTG]
3426
3502
+
Pro
GGG
[ENA]
¡û
>W2011402683
RCTH01000021
Bacillota
Geobacillus stearothermophilus FHS-PCGT429 [RCTH]
36443
36519
+
Pro
GGG
[ENA]
¡û
>W2011402795
RCTI01000054
Bacillota
Geobacillus stearothermophilus FHS-PPGT111 [RCTI]
3535
3611
+
Pro
GGG
[ENA]
¡û
>W2011402884
RCTJ01000054
Bacillota
Geobacillus stearothermophilus FHS-PPGT130 [RCTJ]
11527
11451
-
Pro
GGG
[ENA]
¡û
>W2011402968
RCTK01000055
Bacillota
Geobacillus stearothermophilus FHS-PCGT134 [RCTK]
3535
3611
+
Pro
GGG
[ENA]
¡û
>W2011546658
SDKL01000027
Bacillota
Geobacillus sp. PK12 [SDKL]
17361
17285
-
Pro
GGG
[ENA]
¡û
>W2011546765
SDLA01000003
Bacillota
Geobacillus sp. BMUD [SDLA]
16837
16761
-
Pro
GGG
[ENA]
¡û
>W2011546856
SDLB01000023
Bacillota
Geobacillus sp. MR [SDLB]
15888
15812
-
Pro
GGG
[ENA]
¡û
>W2011546945
SDLC01000018
Bacillota
Geobacillus sp. MMMUD3 [SDLC]
7723
7647
-
Pro
GGG
[ENA]
¡û
>W2011547078
SDLD01000040
Bacillota
Geobacillus sp. DSP4a [SDLD]
15699
15623
-
Pro
GGG
[ENA]
¡û
>W2011632385
SMDM01000036
Bacillota
Anoxybacillus amylolyticus MR3C [SMDM]
18751
18675
-
Pro
GGG
[ENA]
¡û
>W2011753543
SZVQ01000106
Bacillota
Geobacillus thermoleovorans RL [SZVQ]
17173
17097
-
Pro
GGG
[ENA]
¡û
>W2011823440
UGGS01000001
Bacillota
[Flavobacterium] thermophilum NCTC11526 [UGGS]
1162339
1162415
+
Pro
GGG
[ENA]
¡û
>W2012063628
VJWB01000001
Bacillota
Geobacillus sp. C56-T2 [VJWB]
2067743
2067819
+
Pro
GGG
[ENA]
¡û
>W2012071055
VKJO01000017
Bacillota
Geobacillus sp. LEMMJ02 [VKJO]
19398
19322
-
Pro
GGG
[ENA]
¡û
>W2110664690
JAHZOG010000005
Bacillota
Geobacillus thermoleovorans [JAHZOG]
28770
28694
-
Pro
GGG
[ENA]
¡û
>C201016401
AP022557
Bacillota
Geobacillus subterraneus E55-1 [AP022557]
1299877
1299953
+
Pro
GGG
-
¡û
>C201060591
CP035485
Bacillota
Salicibibacter halophilus NKC3-5 [CP035485]
3591152
3591076
-
Pro
GGG
-
¡û
>C211099870
CP054705
Bacillota
Salicibibacter sp. NKC5-3 [CP054705]
1616368
1616292
-
Pro
GGG
-
¡û
>C211147177
CP061470
Bacillota
Geobacillus zalihae SURF-189 [CP061470]
1371256
1371332
+
Pro
GGG
-
¡û
>C211147264
CP061471
Bacillota
Geobacillus zalihae SURF-114 [CP061471]
733928
734004
+
Pro
GGG
-
¡û
>C211147385
CP061472
Bacillota
Geobacillus thermoleovorans SURF-48B [CP061472]
3799720
3799644
-
Pro
GGG
-
¡û
>C211147439
CP061472
Bacillota
Geobacillus thermoleovorans SURF-48B [CP061472]
120106
120030
-
Pro
GGG
-
¡û
>C211147440
CP061473
Bacillota
Geobacillus sp. 47C-IIb [CP061473]
512105
512181
+
Pro
GGG
-
¡û
>C211147612
CP061474
Bacillota
Geobacillus sp. 46C-IIa [CP061474]
1227035
1226959
-
Pro
GGG
-
¡û
>C211172661
CP063162
Bacillota
Geobacillus stearothermophilus DG-1 [CP063162]
2133214
2133290
+
Pro
GGG
-
¡û
>C231053826
CP046250
Bacillota
Geobacillus thermoleovorans V0 [CP046250]
2055819
2055895
+
Pro
GGG
-
¡û
>C241041937
CP034952
Bacillota
Geobacillus stearothermophilus B5 [CP034952]
2014847
2014923
+
Pro
GGG
-
¡û
>C241063852
CP042251
Bacillota
Geobacillus thermoleovorans ARTRW1 [CP042251]
2214688
2214764
+
Pro
GGG
-
¡û
>C241148869
CP051162
Bacillota
Geobacillus subterraneus CPW16 [CP051162]
2634866
2634942
+
Pro
GGG
-
¡û
>C241282465
CP128494
Bacillota
Geobacillus stearothermophilus ATCC 12980 [CP128494]
1626811
1626887
+
Pro
GGG
-
¡û
>C241309446
CP133461
Bacillota
Geobacillus thermodenitrificans K1041 [CP133461]
2296356
2296432
+
Pro
GGG
-
¡û
>C10107224
CP002050
Bacillota
Geobacillus sp. C56-T3 [CP002050]
1448799
1448723
-
Pro
GGG
[Ensembl]
¡û
>C10107371
CP001794
Bacillota
Geobacillus sp. Y412MC61 [CP001794]
3020382
3020458
+
Pro
GGG
[Ensembl]
¡û
>C11109663
CP002442
Bacillota
Geobacillus sp. Y412MC52 [CP002442]
2160313
2160389
+
Pro
GGG
[Ensembl]
¡û
>W1511523110
JYBP01000003
Bacillota
Geobacillus kaustophilus Et7/4 [JYBP]
842335
842259
-
Pro
GGG
[ENA]
¡û
>W1511523398
JYCF01000106
Bacillota
Geobacillus kaustophilus Et2/3 [JYCF]
13887
13811
-
Pro
GGG
[ENA]
¡û
>W1511523416
JYCG01000157
Bacillota
Anoxybacillus geothermalis ATCC BAA-2555 [JYCG]
16320
16244
-
Pro
GGG
[ENA]
¡û
>W1511534320
JYNW01000020
Bacillota
Geobacillus stearothermophilus ATCC 12980 [JYNW]
10080
10004
-
Pro
GGG
[ENA]
¡û
>W1511638203
LDNS01000070
Bacillota
Geobacillus stearothermophilus A1 [LDNS]
11850
11774
-
Pro
GGG
[ENA]
¡û
>W1511638334
LDNT01000188
Bacillota
Geobacillus stearothermophilus P3 [LDNT]
3507
3583
+
Pro
GGG
[ENA]
¡û
>W1511638428
LDNU01000271
Bacillota
Geobacillus stearothermophilus D1 [LDNU]
1212
1136
-
Pro
GGG
[ENA]
¡û
>W1511638590
LDNZ01000139
Bacillota
Geobacillus sp. T6 [LDNZ]
440
364
-
Pro
GGG
[ENA]
¡û
>C121006356
CP003125
Bacillota
Geobacillus thermoleovorans CCB_US3_UF5 [CP003125]
2216008
2216084
+
Pro
GGG
[Ensembl]
¡û
>C161071361
CP014335
Bacillota
Geobacillus thermoleovorans KCTC 3570 [CP014335]
2030367
2030443
+
Pro
GGG
-
¡û
>C161071527
CP014342
Bacillota
Geobacillus subterraneus KCTC 3922 [CP014342]
1254742
1254666
-
Pro
GGG
[Ensembl]
¡û
>C161076624
CP014749
Bacillota
Geobacillus sp. JS12 [CP014749]
1767445
1767521
+
Pro
GGG
-
¡û
>W1610066556
BCPV01000017
Bacillota
Geobacillus zalihae NBRC 101842 [BCPV]
21630
21554
-
Pro
GGG
[ENA]
¡û
>W1610067094
BCQG01000078
Bacillota
Geobacillus jurassicus NBRC 107829 [BCQG]
9631
9707
+
Pro
GGG
[ENA]
¡û
>C131011226
CP004008
Bacillota
Geobacillus sp. GHH01 [CP004008]
2233433
2233509
+
Pro
GGG
[Ensembl]
¡û
>W1610627779
LIDX01000095
Bacillota
Geobacillus sp. PA-3 [LIDX]
16066
16142
+
Pro
GGG
[ENA]
¡û
>W1610641178
LJAJ01000025
Bacillota
Geobacillus sp. BCO2 [LJAJ]
32925
33001
+
Pro
GGG
[ENA]
¡û
>W1610699438
LLKS01000052
Bacillota
Geobacillus sp. Sah69 [LLKS]
13328
13252
-
Pro
GGG
[ENA]
¡û
>W1610854357
LQIE01000109
Bacillota
Geobacillus stearothermophilus [LQIE]
15651
15575
-
Pro
GGG
[ENA]
¡û
>W1610869129
LQYV01000016
Bacillota
Geobacillus stearothermophilus [LQYV]
2631
2555
-
Pro
GGG
[ENA]
¡û
>W1610869375
LQYX01000116
Bacillota
Geobacillus sp. B4113_201601 [LQYX]
4323
4399
+
Pro
GGG
[ENA]
¡û
>W1610869385
LQYY01000059
Bacillota
Geobacillus stearothermophilus [LQYY]
12035
11959
-
Pro
GGG
[ENA]
¡û
>W1610928247
LUCR01000071
Bacillota
Geobacillus stearothermophilus [LUCR]
3320
3396
+
Pro
GGG
[ENA]
¡û
>W1610955173
LVHZ01000011
Bacillota
Geobacillus stearothermophilus 15 [LVHZ]
11425
11349
-
Pro
GGG
[ENA]
¡û
>W1610986840
LWHE01000108
Bacillota
Geobacillus subterraneus [LWHE]
10206
10130
-
Pro
GGG
[ENA]
¡û
>W1710063894
BCPV01000017
Bacillota
Geobacillus zalihae NBRC 101842 [BCPV]
21630
21554
-
Pro
GGG
[ENA]
¡û
>W1710064525
BCQG01000078
Bacillota
Geobacillus jurassicus NBRC 107829 [BCQG]
9631
9707
+
Pro
GGG
[ENA]
¡û
>W1710758906
LIDX01000095
Bacillota
Geobacillus sp. PA-3 [LIDX]
16066
16142
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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