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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167749 (18 seq.)
>W131218679
ATXY01000006
Bacteroidota
Flectobacillus major DSM 103 [ATXY]
895904
895978
+
Met
CAT
[ENA]
¡û
>WENV181857593
OGWO01018142
[OGWO] freshwater metagenome; freshwater
412
486
+
Ile2
CAT
[ENA]
¡û
>C181177176
CP029346
Bacteroidota
Aquirufa nivalisilvae HME7025 [CP029346]
1470378
1470453
+
Met
CAT
-
¡û
>W1910941839
NJFZ01000026
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
7064
7138
+
Met
CAT
[ENA]
¡û
>W2010434980
JAAAKT010000024
Bacteroidota
Emticicia sp. ODNR4P [JAAAKT]
3463
3389
-
Ile2
CAT
[ENA]
¡û
>W2010435438
JAAALB010000023
Bacteroidota
Cellulophaga sp. BC115SP [JAAALB]
12296
12222
-
Ile2
CAT
[ENA]
¡û
>W2010522719
JAANOP010000002
Bacteroidota
Cytophagaceae bacterium 50A-KIRBA [JAANOP]
305210
305135
-
Ile2
CAT
[ENA]
¡û
>W2010984662
NJFZ01000026
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
7064
7138
+
Ile2
CAT
[ENA]
¡û
>W2011522506
SACY01000001
Bacteroidota
Cytophagaceae bacterium FSY-15 [SACY]
464426
464352
-
Ile2
CAT
[ENA]
¡û
>W2011544670
SDHY01000001
Bacteroidota
Cytophagaceae bacterium CAR-16 [SDHY]
81011
81086
+
Ile2
CAT
[ENA]
¡û
>W2011558014
SEWW01000001
Bacteroidota
Cytophagaceae bacterium 50C-KIRBA [SEWW]
223305
223380
+
Ile2
CAT
[ENA]
¡û
>W2011558063
SEWX01000005
Bacteroidota
Cytophagaceae bacterium 59G-WUEMPEL [SEWX]
326037
326112
+
Ile2
CAT
[ENA]
¡û
>W2011558098
SEWY01000003
Bacteroidota
Cytophagaceae bacterium 103A-SOEBACH [SEWY]
257989
258063
+
Ile2
CAT
[ENA]
¡û
>W2011558144
SEWZ01000004
Bacteroidota
Cytophagaceae bacterium 30S-ANTBAC [SEWZ]
285824
285750
-
Ile2
CAT
[ENA]
¡û
>W2110147597
JAANOG010000001
Bacteroidota
Aquirufa sp. 15D-MOB [JAANOG]
220873
220948
+
Ile2
CAT
[ENA]
¡û
>C211081267
CP049834
Bacteroidota
Aquirufa sp. 9H-EGSE [CP049834]
2458679
2458605
-
Ile2
CAT
-
¡û
>C231060163
CP049835
Bacteroidota
Aquirufa antheringensis 44A-TON [CP049835]
2406998
2406924
-
Ile2
CAT
-
¡û
>W1710573243
FOXH01000005
Bacteroidota
Pseudarcicella hirudinis [FOXH]
22981
22905
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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