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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167810 (90 seq.)
>W131175984
ARJR01000047
Bacillota
Saccharibacillus kuerlensis DSM 22868 [ARJR]
41435
41510
+
Arg
TCT
[ENA]
¡û
>W131176740
ARKG01000105
Bacillota
Cohnella laeviribosi DSM 21336 [ARKG]
18887
18963
+
Arg
TCT
[ENA]
¡û
>W1711632782
MPTB01000013
Bacillota
Paenibacillus borealis [MPTB]
40474
40551
+
Arg
TCT
[ENA]
¡û
>W1711632783
MPTB01000013
Bacillota
Paenibacillus borealis [MPTB]
72726
72649
-
Arg
TCT
[ENA]
¡û
>W1711677360
MRTL01000033
Bacillota
Paenibacillus sp. FSL H8-0259 [MRTL]
16742
16665
-
Arg
TCT
[ENA]
¡û
>W1711678017
MRTW01000041
Bacillota
Paenibacillus sp. FSL R7-0333 [MRTW]
59094
59171
+
Arg
TCT
[ENA]
¡û
>W1711678062
MRTX01000021
Bacillota
Paenibacillus sp. FSL R7-0337 [MRTX]
41158
41235
+
Arg
TCT
[ENA]
¡û
>W1711678063
MRTX01000021
Bacillota
Paenibacillus sp. FSL R7-0337 [MRTX]
58789
58712
-
Arg
TCT
[ENA]
¡û
>W1711678116
MRTY01000013
Bacillota
Paenibacillus sp. FSL R7-0273 [MRTY]
103484
103409
-
Arg
TCT
[ENA]
¡û
>W1712102870
NIOB01000008
Bacillota
Saccharibacillus sp. O16 [NIOB]
41259
41334
+
Arg
TCT
[ENA]
¡û
>W1712108618
NJDE01000009
Bacillota
Saccharibacillus sp. O23 [NJDE]
402602
402527
-
Arg
TCT
[ENA]
¡û
>W141022558
AJTY01001019
Bacillota
Paenibacillus sonchi X19-5 [AJTY]
7521
7598
+
Arg
TCT
[ENA]
¡û
>W141072314
ASPS01000024
Bacillota
Paenibacillus sp. FSL R7-269 [ASPS]
16314
16391
+
Arg
TCT
[ENA]
¡û
>W141072340
ASPS01000049
Bacillota
Paenibacillus sp. FSL R7-269 [ASPS]
82895
82972
+
Arg
TCT
[ENA]
¡û
>W141072702
ASPX01000037
Bacillota
Paenibacillus sp. FSL R7-277 [ASPX]
139570
139647
+
Arg
TCT
[ENA]
¡û
>W141072703
ASPX01000037
Bacillota
Paenibacillus sp. FSL R7-277 [ASPX]
157462
157385
-
Arg
TCT
[ENA]
¡û
>W141072989
ASQQ01000225
Bacillota
Paenibacillus durus ATCC 35681 [ASQQ]
21777
21854
+
Arg
TCT
[ENA]
¡û
>W141072992
ASQQ01000319
Bacillota
Paenibacillus durus ATCC 35681 [ASQQ]
1574
1499
-
Arg
TCT
[ENA]
¡û
>W141073360
ASSC01000080
Bacillota
Paenibacillus forsythiae T98 [ASSC]
6704
6779
+
Arg
TCT
[ENA]
¡û
>W141073508
ASSF01000154
Bacillota
Paenibacillus sophorae S27 [ASSF]
654
729
+
Arg
TCT
[ENA]
¡û
>W141073550
ASSF01000706
Bacillota
Paenibacillus sophorae S27 [ASSF]
7137
7214
+
Arg
TCT
[ENA]
¡û
>W141263410
CCDG010000022
Bacillota
Paenibacillus camerounensis G4 [CCDG]
19594
19519
-
Arg
TCT
[ENA]
¡û
>W141263436
CCDG010000088
Bacillota
Paenibacillus camerounensis G4 [CCDG]
2940
3015
+
Arg
TCT
[ENA]
¡û
>WENV170707786
LNAP01034165
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2371
2447
+
Arg
TCT
[ENA]
¡û
>W141452203
JFBU01000022
Bacillota
Saccharibacillus sacchari DSM 19268 [JFBU]
44039
44114
+
Arg
TCT
[ENA]
¡û
>C191188745
CP041217
Bacillota
Saccharibacillus brassicae ATSA2 [CP041217]
1020869
1020944
+
Arg
TCT
-
¡û
>C151005608
CP004078
Bacillota
Paenibacillus sabinae T27 [CP004078]
4057694
4057619
-
Arg
TCT
[Ensembl]
¡û
>C151046408
CP009241
Bacillota
Paenibacillus sp. FSL H7-0357 [CP009241]
6134950
6135027
+
Arg
TCT
[Ensembl]
¡û
>C151046441
CP009241
Bacillota
Paenibacillus sp. FSL H7-0357 [CP009241]
6169080
6169003
-
Arg
TCT
[Ensembl]
¡û
>C151047547
CP009280
Bacillota
Paenibacillus sp. FSL P4-0081 [CP009280]
6931791
6931868
+
Arg
TCT
[Ensembl]
¡û
>C151047580
CP009280
Bacillota
Paenibacillus sp. FSL P4-0081 [CP009280]
6956927
6956850
-
Arg
TCT
[Ensembl]
¡û
>C151047754
CP009282
Bacillota
Paenibacillus sp. FSL R5-0912 [CP009282]
6293246
6293169
-
Arg
TCT
[Ensembl]
¡û
>C151047840
CP009283
Bacillota
Paenibacillus sp. FSL R7-0273 [CP009283]
5906793
5906718
-
Arg
TCT
[Ensembl]
¡û
>C151047892
CP009284
Bacillota
Paenibacillus sp. FSL R7-0331 [CP009284]
5606334
5606411
+
Arg
TCT
[Ensembl]
¡û
>C151047926
CP009284
Bacillota
Paenibacillus sp. FSL R7-0331 [CP009284]
5627575
5627500
-
Arg
TCT
[Ensembl]
¡û
>C151047976
CP009285
Bacillota
Paenibacillus borealis DSM 13188 [CP009285]
6606930
6607007
+
Arg
TCT
[Ensembl]
¡û
>C151048009
CP009285
Bacillota
Paenibacillus borealis DSM 13188 [CP009285]
6629381
6629304
-
Arg
TCT
[Ensembl]
¡û
>C151048065
CP009286
Bacillota
Paenibacillus stellifer DSM 14472 [CP009286]
4322553
4322631
+
Arg
TCT
[Ensembl]
¡û
>C151048096
CP009286
Bacillota
Paenibacillus stellifer DSM 14472 [CP009286]
4348371
4348294
-
Arg
TCT
[Ensembl]
¡û
>C151048236
CP009288
Bacillota
Paenibacillus durus DSM 1735 [CP009288]
4638918
4638993
+
Arg
TCT
[Ensembl]
¡û
>C151048268
CP009288
Bacillota
Paenibacillus durus DSM 1735 [CP009288]
4649119
4649044
-
Arg
TCT
[Ensembl]
¡û
>C151104403
LN831776
Bacillota
Paenibacillus riograndensis SBR5 [LN831776]
6378346
6378423
+
Arg
TCT
[Ensembl]
¡û
>W2010334497
CACYBS010000404
Bacillota
Erysipelothrix rhusiopathiae [CACYBS]
9523
9599
+
Arg
TCT
[ENA]
¡û
>W2010458609
JAAFGS010000009
Bacillota
Saccharibacillus sp. VR-M41 [JAAFGS]
40751
40826
+
Arg
TCT
[ENA]
¡û
>W2010459245
JAAFZF010000037
Bacillota
Bacillus sp. FJAT-2464 [JAAFZF]
6745
6821
+
Arg
TCT
[ENA]
¡û
>W2010493322
JAAKGU010000006
Bacillota
Paenibacillus sp. 7124 [JAAKGU]
81190
81265
+
Arg
TCT
[ENA]
¡û
>W2010493323
JAAKGU010000006
Bacillota
Paenibacillus sp. 7124 [JAAKGU]
92985
92910
-
Arg
TCT
[ENA]
¡û
>W2010583401
JAAZWC010000007
Bacillota
Saccharibacillus qingshengii JCM 31172 [JAAZWC]
41091
41166
+
Arg
TCT
[ENA]
¡û
>W2010583474
JAAZWD010000005
Bacillota
Saccharibacillus deserti KCTC 33693 [JAAZWD]
295706
295631
-
Arg
TCT
[ENA]
¡û
>W2010583528
JAAZWE010000003
Bacillota
Saccharibacillus endophyticus CCM 8702 [JAAZWE]
719954
719879
-
Arg
TCT
[ENA]
¡û
>W2010604168
JABJVN010000005
Bacillota
Saccharibacillus deserti WLJ055 [JABJVN]
295706
295631
-
Arg
TCT
[ENA]
¡û
>W2010609592
JABMKX010000005
Bacillota
Paenibacillus tritici LMG 29502 [JABMKX]
273634
273558
-
Arg
TCT
[ENA]
¡û
>W2010716511
JACHXK010000003
Bacillota
Paenibacillus phyllosphaerae CECT 5862 [JACHXK]
389440
389364
-
Arg
TCT
[ENA]
¡û
>W2011413801
REGQ01000001
Bacillota
Paenibacillaceae bacterium CAVE-418 [REGQ]
136911
136986
+
Arg
TCT
[ENA]
¡û
>W2011479155
RQPI01000003
Bacillota
Paenibacillus sp. 7197 [RQPI]
316454
316378
-
Arg
TCT
[ENA]
¡û
>W2011979024
VCRA01000001
Bacillota
Paenibacillus sp. SYSU_K30004 [VCRA]
494106
494181
+
Arg
TCT
[ENA]
¡û
>W2012096962
VNHS01000006
Bacillota
Paenibacillus methanolicus BL24 [VNHS]
169609
169685
+
Arg
TCT
[ENA]
¡û
>W2012197530
VWRQ01000007
Bacillota
Paenibacillus sp. SYSU G01001 [VWRQ]
90569
90647
+
Arg
TCT
[ENA]
¡û
>W2012197531
VWRQ01000007
Bacillota
Paenibacillus sp. SYSU G01001 [VWRQ]
107541
107466
-
Arg
TCT
[ENA]
¡û
>W2012208185
VYKK01000021
Bacillota
Paenibacillus spiritus MER_111 [VYKK]
49691
49766
+
Arg
TCT
[ENA]
¡û
>W2012328442
WHOB01000079
Bacillota
Paenibacillus sp. LMG 31459 [WHOB]
49235
49311
+
Arg
TCT
[ENA]
¡û
>W2012328454
WHOB01000092
Bacillota
Paenibacillus sp. LMG 31459 [WHOB]
7768
7844
+
Arg
TCT
[ENA]
¡û
>W2110019825
BMDD01000003
Bacillota
Saccharibacillus endophyticus CCM 8702 [BMDD]
719865
719790
-
Arg
TCT
[ENA]
¡û
>W2110029299
BMKR01000001
Bacillota
Paenibacillus albidus CGMCC 1.16134 [BMKR]
36155
36231
+
Arg
TCT
[ENA]
¡û
>W2110030434
BMLN01000010
Bacillota
Saccharibacillus kuerlensis CGMCC 1.6964 [BMLN]
109712
109637
-
Arg
TCT
[ENA]
¡û
>W2110538994
JAGGKP010000013
Bacillota
Paenibacillus sediminis DSM 23491 [JAGGKP]
12765
12689
-
Arg
TCT
[ENA]
¡û
>W2110540324
JAGGLV010000017
Bacillota
Paenibacillus silagei DSM 101953 [JAGGLV]
12376
12452
+
Arg
TCT
[ENA]
¡û
>W2110540325
JAGGLV010000017
Bacillota
Paenibacillus silagei DSM 101953 [JAGGLV]
31505
31429
-
Arg
TCT
[ENA]
¡û
>W2110541622
JAGGNS010000045
Bacillota
Paenibacillus albidus ISL-16 [JAGGNS]
127557
127633
+
Arg
TCT
[ENA]
¡û
>W2110587767
JAHBAZ010000038
Bacillota
Paenibacillus sp. CGMCC 1.18879 [JAHBAZ]
27337
27261
-
Arg
TCT
[ENA]
¡û
>W2110587789
JAHBAZ010000064
Bacillota
Paenibacillus sp. CGMCC 1.18879 [JAHBAZ]
61011
61089
+
Arg
TCT
[ENA]
¡û
>C201022885
AP023239
Bacillota
Paenibacillus sp. URB8-2 [AP023239]
4339588
4339664
+
Arg
TCT
-
¡û
>C211250117
CP068595
Bacillota
Paenibacillus sonchi LMG 24727 [CP068595]
533328
533404
+
Arg
TCT
-
¡û
>C211281232
CP070969
Bacillota
Paenibacillus sp. TB2019 [CP070969]
5060370
5060294
-
Arg
TCT
-
¡û
>C211321544
CP073365
Bacillota
Paenibacillus tritici PH55-1 [CP073365]
6276710
6276786
+
Arg
TCT
-
¡û
>C211347197
CP076607
Bacillota
Paenibacillus sophorae DSM 23020 [CP076607]
5193332
5193408
+
Arg
TCT
-
¡û
>C211347226
CP076607
Bacillota
Paenibacillus sophorae DSM 23020 [CP076607]
5203641
5203566
-
Arg
TCT
-
¡û
>C231298484
CP091430
Bacillota
Paenibacillus sp. PHS-Z3 [CP091430]
4947428
4947504
+
Arg
TCT
-
¡û
>W1510562408
CTED01000470
Bacillota
Paenibacillus ihuae GD6 [CTED]
2660
2583
-
Arg
TCT
[ENA]
¡û
>W1511430170
JUEI01000017
Bacillota
Paenibacillus sp. IHB B 3415 [JUEI]
19173
19096
-
Arg
TCT
[ENA]
¡û
>W1511430171
JUEI01000017
Bacillota
Paenibacillus sp. IHB B 3415 [JUEI]
19042
18965
-
Arg
TCT
[ENA]
¡û
>W1511430199
JUEI01000162
Bacillota
Paenibacillus sp. IHB B 3415 [JUEI]
3786
3709
-
Arg
TCT
[ENA]
¡û
>W1511499677
JXAK01000023
Bacillota
Paenibacillus sp. VKM B-2647 [JXAK]
34737
34662
-
Arg
TCT
[ENA]
¡û
>W1610633907
LIRA01001211
Bacillota
Paenibacillus riograndensis [LIRA]
6813
6890
+
Arg
TCT
[ENA]
¡û
>W1610633982
LIRB01000136
Bacillota
Paenibacillus riograndensis [LIRB]
127885
127808
-
Arg
TCT
[ENA]
¡û
>W1710547829
FODH01000008
Bacillota
Paenibacillus sophorae [FODH]
227931
227854
-
Arg
TCT
[ENA]
¡û
>W1710554403
FOIK01000004
Bacillota
Paenibacillus sp. NFR01 [FOIK]
65593
65670
+
Arg
TCT
[ENA]
¡û
>W1710554420
FOIK01000004
Bacillota
Paenibacillus sp. NFR01 [FOIK]
92598
92521
-
Arg
TCT
[ENA]
¡û
>W1710768339
LIRA01001211
Bacillota
Paenibacillus riograndensis [LIRA]
6813
6890
+
Arg
TCT
[ENA]
¡û
>W1710768414
LIRB01000136
Bacillota
Paenibacillus riograndensis [LIRB]
127885
127808
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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