This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167827 (20 seq.)
>WENV180030329
FTJM01000158
[FTJM] metagenome; soil
5760
5834
+
Ile2
CAT
[ENA]
¡û
>WENV170784080
MCHG01000007
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
253360
253284
-
Met
CAT
[ENA]
¡û
>C181198650
CP031264
Actinomycetota
Peterkaempfera bronchialis DSM 106435 [CP031264]
1908075
1908001
-
Met
CAT
-
¡û
>W09109058
ABTU01000026
Actinomycetota
Geodermatophilus obscurus DSM 43160 [ABTU]
6808
6732
-
Met
CAT
[ENA]
¡û
>W1911495755
OBQI01000005
Actinomycetota
Blastococcus aggregatus DSM 4725 [OBQI]
461706
461781
+
Met
CAT
[ENA]
¡û
>W2010465962
JAAGLV010000028
Actinomycetota
Streptomyces sp. SID13031 [JAAGLV]
76719
76793
+
Ile2
CAT
[ENA]
¡û
>W2010668731
JACBZT010000001
Actinomycetota
Geodermatophilus daqingensis DSM 104001 [JACBZT]
3742409
3742334
-
Ile2
CAT
[ENA]
¡û
>W2011156659
OBQI01000005
Actinomycetota
Blastococcus aggregatus DSM 4725 [OBQI]
461706
461781
+
Ile2
CAT
[ENA]
¡û
>W2011620814
SLVW01000028
Actinomycetota
Kribbella sp. VKM Ac-2500 [SLVW]
24410
24484
+
Ile2
CAT
[ENA]
¡û
>W2011673815
SPQL01000001
Actinomycetota
Blastococcus sp. CT_GayMR19 [SPQL]
226174
226250
+
Ile2
CAT
[ENA]
¡û
>W2011673864
SPQM01000002
Actinomycetota
Blastococcus sp. CT_GayMR20 [SPQM]
114733
114658
-
Ile2
CAT
[ENA]
¡û
>W2110178668
JABGCI010000009
Actinomycetota
Blastococcus endophyticus CPCC 205247 [JABGCI]
113493
113418
-
Ile2
CAT
[ENA]
¡û
>W2110178739
JABGCK010000001
Actinomycetota
Blastococcus aggregatus CPCC 205347 [JABGCK]
445577
445653
+
Ile2
CAT
[ENA]
¡û
>W2110437050
JAEOAA010000002
Actinomycetota
Blastococcus sp. TML/C7B [JAEOAA]
965173
965248
+
Ile2
CAT
[ENA]
¡û
>W2110699666
JAIUJY010000001
Actinomycetota
Blastococcus sp. LR1 [JAIUJY]
455215
455290
+
Ile2
CAT
[ENA]
¡û
>C231385357
CP097463
Actinomycetota
Jatrophihabitans sp. SB3-54 [CP097463]
3783123
3783199
+
Ile2
CAT
-
¡û
>C231555847
CP114065
Actinomycetota
Kribbella sp. CA-293567 [CP114065]
5186636
5186560
-
Ile2
CAT
-
¡û
>C241204592
CP107954
Actinomycetota
Kribbella sp. NBC_00382 [CP107954]
5271199
5271273
+
Ile2
CAT
-
¡û
>C241210309
CP108487
Actinomycetota
Kribbella sp. NBC_01245 [CP108487]
2985561
2985637
+
Ile2
CAT
-
¡û
>W1710530752
FNOZ01000035
Actinomycetota
Modestobacter sp. DSM 44400 [FNOZ]
38155
38231
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK