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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16787 (43 seq.)
>W1711128531
LUSO01000001
Bacillota
Clostridium baratii [LUSO]
202395
202305
-
Ser
TGA
[ENA]
¡û
>W1711128532
LUSO01000001
Bacillota
Clostridium baratii [LUSO]
199510
199420
-
Ser
TGA
[ENA]
¡û
>W1711207157
LXFF01000015
Bacillota
Candidatus Arthromitus sp. SFB-turkey [LXFF]
23218
23128
-
Ser
TGA
[ENA]
¡û
>W1711462151
MJHM01000023
Bacillota
Clostridium baratii [MJHM]
202217
202127
-
Ser
TGA
[ENA]
¡û
>W1711462152
MJHM01000023
Bacillota
Clostridium baratii [MJHM]
199332
199242
-
Ser
TGA
[ENA]
¡û
>C171030499
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
149362
149272
-
Ser
TGA
-
¡û
>C171030501
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
149046
148956
-
Ser
TGA
-
¡û
>WENV180337058
OBLG01011417
[OBLG] human gut metagenome; human gut
830
920
+
Ser
TGA
[ENA]
¢þ
>WENV180528754
OCHJ01019326
[OCHJ] human gut metagenome; human gut
1106
1016
-
Ser
TGA
[ENA]
¢þ
>WENV180622405
OCQC01043463
[OCQC] human gut metagenome; human gut
306
216
-
Ser
TGA
[ENA]
¢þ
>W141082945
AUPA01000080
Bacillota
Clostridium sp. BL8 [AUPA]
11342
11432
+
Ser
TGA
[ENA]
¡û
>WENV181800002
OGRY01010410
[OGRY] human gut metagenome; faeces
3321
3411
+
Ser
TGA
[ENA]
¢þ
>WENV182794918
OJSP01082696
[OJSP] human gut metagenome; human gut
201
291
+
Ser
TGA
[ENA]
¢þ
>WENV183147070
OLOM01072619
[OLOM] human gut metagenome; faeces
206
296
+
Ser
TGA
[ENA]
¢þ
>WENV183148080
OLON01009987
[OLON] human gut metagenome; faeces
96
186
+
Ser
TGA
[ENA]
¢þ
>WENV183160123
OLOU01057657
[OLOU] human gut metagenome; faeces
588
678
+
Ser
TGA
[ENA]
¢þ
>WENV183162246
OLOV01098742
[OLOV] human gut metagenome; faeces
312
222
-
Ser
TGA
[ENA]
¢þ
>WENV183241359
OLRA01113043
[OLRA] human gut metagenome; faeces
415
505
+
Ser
TGA
[ENA]
¢þ
>WENV183261090
OLRP01007538
[OLRP] human gut metagenome; faeces
3292
3202
-
Ser
TGA
[ENA]
¢þ
>WENV183520168
OMNT01006601
[OMNT] human gut metagenome; faeces
5058
5148
+
Ser
TGA
[ENA]
¢þ
>C151036008
CP008713
Bacillota
Candidatus Arthromitus sp. SFB-mouse-NL [CP008713]
12400
12490
+
Ser
TGA
[Ensembl]
¡û
>C11101088
AP012202
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Japan [AP012202]
12400
12490
+
Ser
TGA
[Ensembl]
¡û
>C11101127
AP012209
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Yit [AP012209]
12400
12490
+
Ser
TGA
[Ensembl]
¡û
>C11101164
AP012210
Bacillota
Candidatus Arthromitus sp. SFB-rat-Yit [AP012210]
12394
12484
+
Ser
TGA
[Ensembl]
¡û
>W11177341
AGAG01000001
Bacillota
Candidatus Arthromitus sp. SFB-mouse sp. SFB-mouse-NYU [AGAG]
30582
30492
-
Ser
TGA
[ENA]
¡û
>W1610061698
BCMV01000009
Bacillota
Sarcina ventriculi [BCMV]
65796
65706
-
Ser
TGA
[ENA]
¡û
>W1610061700
BCMV01000009
Bacillota
Sarcina ventriculi [BCMV]
65423
65333
-
Ser
TGA
[ENA]
¡û
>W1610103154
CZAV01000005
Bacillota
Clostridium baratii [CZAV]
6869
6959
+
Ser
TGA
[ENA]
¡û
>W1610103155
CZAV01000005
Bacillota
Clostridium baratii [CZAV]
9752
9842
+
Ser
TGA
[ENA]
¡û
>W121006925
AFXS01000185
Bacillota
Candidatus Arthromitus sp. SFB-2 [AFXS]
402
312
-
Ser
TGA
[ENA]
¡û
>W121007024
AFXW01000108
Bacillota
Candidatus Arthromitus sp. SFB-co [AFXW]
1031
941
-
Ser
TGA
[ENA]
¡û
>W121021235
AGVP01000001
Bacillota
Candidatus Arthromitus sp. SFB-mouse-SU [AGVP]
12400
12490
+
Ser
TGA
[ENA]
¡û
>W1610616884
LGRR01000028
Bacillota
Clostridium baratii [LGRR]
181665
181575
-
Ser
TGA
[ENA]
¡û
>W1610616885
LGRR01000028
Bacillota
Clostridium baratii [LGRR]
178782
178692
-
Ser
TGA
[ENA]
¡û
>W1610995187
LXFF01000015
Bacillota
Candidatus Arthromitus sp. SFB-turkey [LXFF]
23218
23128
-
Ser
TGA
[ENA]
¡û
>W1710059363
BCMV01000009
Bacillota
Sarcina ventriculi [BCMV]
65796
65706
-
Ser
TGA
[ENA]
¡û
>W1710059365
BCMV01000009
Bacillota
Sarcina ventriculi [BCMV]
65423
65333
-
Ser
TGA
[ENA]
¡û
>W1710105909
CZAV01000005
Bacillota
Clostridium baratii [CZAV]
6869
6959
+
Ser
TGA
[ENA]
¡û
>W1710105910
CZAV01000005
Bacillota
Clostridium baratii [CZAV]
9752
9842
+
Ser
TGA
[ENA]
¡û
>W1710586975
FQXP01000017
Bacillota
Clostridium collagenovorans DSM 3089 [FQXP]
19100
19010
-
Ser
TGA
[ENA]
¡û
>W1710586977
FQXP01000017
Bacillota
Clostridium collagenovorans DSM 3089 [FQXP]
12647
12557
-
Ser
TGA
[ENA]
¡û
>W1710742223
LGRR01000028
Bacillota
Clostridium baratii [LGRR]
181665
181575
-
Ser
TGA
[ENA]
¡û
>W1710742224
LGRR01000028
Bacillota
Clostridium baratii [LGRR]
178782
178692
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK