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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16815 (30 seq.)
>W1711019964
LQYH01000121
Bacillota
Heyndrickxia coagulans [LQYH]
2772
2863
+
Ser
GCT
[ENA]
¡û
>W1711020063
LQYJ01000172
Bacillota
Heyndrickxia coagulans [LQYJ]
24785
24694
-
Ser
GCT
[ENA]
¡û
>W131251548
CAVN010000153
Bacillota
Thermobrachium celere DSM 8682 [CAVN]
7330
7239
-
Ser
GCT
[ENA]
¡û
>W131054212
ANAQ01000218
Bacillota
Heyndrickxia coagulans H-1 [ANAQ]
1234
1325
+
Ser
GCT
[ENA]
¡û
>WENV180664735
OCVV011168747
[OCVV] gut metagenome; gut
15
103
+
Ser
GCT
[ENA]
¡û
>WENV180664736
OCVV011168747
[OCVV] gut metagenome; gut
15
103
+
Ser
GCT
[ENA]
¡û
>W141150000
AXAA01000033
Bacillota
Caloramator sp. ALD01 [AXAA]
8499
8590
+
Ser
GCT
[ENA]
¡û
>WENV181683345
OGOV01000139
[OGOV] human gut metagenome; faeces
57468
57559
+
Ser
GCT
[ENA]
¡û
>W141169522
AXVW01000087
Bacillota
Heyndrickxia coagulans CSIL1 [AXVW]
6631
6540
-
Ser
GCT
[ENA]
¡û
>WENV182148288
OHLE01045459
[OHLE] human gut metagenome; feces
316
407
+
Ser
GCT
[ENA]
¡û
>WENV183655367
OQWD01015468
[OQWD] human gut metagenome; human gut
14
105
+
Ser
GCT
[ENA]
¡û
>W1810756385
QPFA01000001
Bacillota
Heyndrickxia coagulans ZB29 [QPFA]
1250500
1250409
-
Ser
GCT
[ENA]
¡û
>C151087819
CP011939
Bacillota
Heyndrickxia coagulans S-lac [CP011939]
3554193
3554102
-
Ser
GCT
[Ensembl]
¡û
>W2010132011
BKZP01000007
Bacillota
Bacillus sp. JC-4 [BKZP]
109804
109713
-
Ser
GCT
[ENA]
¡û
>W2010132100
BKZQ01000084
Bacillota
Bacillus sp. JC-7 [BKZQ]
1394
1303
-
Ser
GCT
[ENA]
¡û
>W2010132157
BKZR01000003
Bacillota
Bacillus sp. PP-18 [BKZR]
109784
109693
-
Ser
GCT
[ENA]
¡û
>W2010445943
JAABON010000147
Bacillota
Bacillus coagulans CICC 20138 [JAABON]
2374
2465
+
Ser
GCT
[ENA]
¡û
>C211240601
CP068054
Bacillota
Weizmannia coagulans FDAARGOS_1160 [CP068054]
2952358
2952449
+
Ser
GCT
-
¡û
>C211347066
CP076597
Bacillota
Weizmannia coagulans CACC 834 [CP076597]
2079780
2079689
-
Ser
GCT
-
¡û
>C231291385
CP091131
Bacillota
Weizmannia coagulans TM3 [CP091131]
2421112
2421203
+
Ser
GCT
-
¡û
>C231626936
CP120208
Bacillota
Weizmannia coagulans HOM5301 [CP120208]
2371462
2371371
-
Ser
GCT
-
¡û
>W2130000874
BMAP01000030
Bacillota
Thermobrachium celere A9 [BMAP]
4721
4812
+
Ser
GCT
[ENA]
¡û
>W1511312746
JPSK01000108
Bacillota
Heyndrickxia coagulans GBI-30, 6086 [JPSK]
51914
51823
-
Ser
GCT
[ENA]
¡û
>W1511595277
LBMQ01000055
Bacillota
Heyndrickxia coagulans NL01 [LBMQ]
13450
13359
-
Ser
GCT
[ENA]
¡û
>W121104819
ALAS01000235
Bacillota
Heyndrickxia coagulans DSM 1 = ATCC 7050 [ALAS]
15408
15317
-
Ser
GCT
[ENA]
¡û
>W1610868183
LQYG01000120
Bacillota
Heyndrickxia coagulans [LQYG]
2268
2359
+
Ser
GCT
[ENA]
¡û
>W1610868252
LQYH01000121
Bacillota
Heyndrickxia coagulans [LQYH]
2772
2863
+
Ser
GCT
[ENA]
¡û
>W1610868317
LQYI01000195
Bacillota
Heyndrickxia coagulans [LQYI]
5433
5524
+
Ser
GCT
[ENA]
¡û
>W1610868351
LQYJ01000172
Bacillota
Heyndrickxia coagulans [LQYJ]
24785
24694
-
Ser
GCT
[ENA]
¡û
>W1710584052
FQVG01000068
Bacillota
Caloramator proteoclasticus DSM 10124 [FQVG]
8763
8854
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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