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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.168260 (64 seq.)
>W1711071324
LSGQ01000032
Bacteroidota
Elizabethkingia miricola [LSGQ]
57398
57473
+
Asn
GTT
[ENA]
¡û
>W1711300356
MAGX01000003
Bacteroidota
Elizabethkingia miricola [MAGX]
933617
933542
-
Asn
GTT
[ENA]
¡û
>W141079152
ATLG01000026
Bacteroidota
Cellulophaga baltica 4 [ATLG]
20407
20333
-
Asn
GTT
[ENA]
¡û
>W141079179
ATLH01000029
Bacteroidota
Cellulophaga baltica 13 [ATLH]
532795
532721
-
Asn
GTT
[ENA]
¡û
>W141079214
ATLI01000026
Bacteroidota
Cellulophaga baltica 18 [ATLI]
552201
552127
-
Asn
GTT
[ENA]
¡û
>W141079253
ATLJ01000035
Bacteroidota
Cellulophaga baltica NN016038 [ATLJ]
53177
53103
-
Asn
GTT
[ENA]
¡û
>WENV170022958
BCQK01086868
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
75
1
-
Asn
GTT
[ENA]
¡û
>WENV170025035
BCQL01190042
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
77
3
-
Asn
GTT
[ENA]
¡û
>WENV170179281
CEOV01130699
[CEOV] marine metagenome genome assembly TARA_062_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3210
3136
-
Asn
GTT
[ENA]
¡û
>WENV170595535
FUFK011840534
[FUFK] metagenome; unknown
160
236
+
Asn
GTT
[ENA]
¡û
>WENV170607601
FUWD010839402
[FUWD] metagenome; unknown
76
1
-
Asn
GTT
[ENA]
¡û
>WENV170844373
MDTA01005127
[MDTA] marine metagenome; seawater
3309
3235
-
Asn
GTT
[ENA]
¡û
>WENV170900816
MDTD01159906
[MDTD] marine metagenome; seawater
2607
2531
-
Asn
GTT
[ENA]
¡û
>C181067201
CP022515
Bacteroidota
Arenibacter algicola SMS7 [CP022515]
1893583
1893657
+
Asn
GTT
-
¡û
>C181175914
CP029186
Bacteroidota
Flavobacterium album HYN0059 [CP029186]
1211937
1211863
-
Asn
GTT
-
¡û
>C181202219
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
4363180
4363106
-
Asn
GTT
-
¡û
>C191182948
CP040812
Bacteroidota
Antarcticibacterium flavum KCTC 52984 [CP040812]
2084116
2084190
+
Asn
GTT
-
¡û
>W141807583
JPOO01000001
Bacteroidota
Arenibacter algicola [JPOO]
40870
40944
+
Asn
GTT
[ENA]
¡û
>W1910796622
MSCM01000002
Bacteroidota
Polaribacter glomeratus ATCC 43844 [MSCM]
281285
281359
+
Asn
GTT
[ENA]
¡û
>C151061185
CP009887
Bacteroidota
Cellulophaga baltica NN016038 [CP009887]
1490539
1490613
+
Asn
GTT
[Ensembl]
¡û
>C151062860
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
1493200
1493274
+
Asn
GTT
[Ensembl]
¡û
>SRA1024230
SRR035084.277345
454 Sequencing (SRP001805)
422
346
-
Asn
GTT
[SRA]
>W2010310984
CABWML010000005
Bacteroidota
Flavobacterium sp. 9AF [CABWML]
160226
160300
+
Asn
GTT
[ENA]
¡û
>W2010449248
JAACYB010000003
Bacteroidota
Flavobacterium sp. LaA7.5 [JAACYB]
246702
246776
+
Asn
GTT
[ENA]
¡û
>W2010587668
JABBHH010000005
Bacteroidota
Flavobacterium sp. SG815 [JABBHH]
104859
104933
+
Asn
GTT
[ENA]
¡û
>W2010904257
MSCM01000002
Bacteroidota
Polaribacter glomeratus ATCC 43844 [MSCM]
281285
281359
+
Asn
GTT
[ENA]
¡û
>W2011014861
NOXV01000193
Bacteroidota
Flavobacterium sp. TH021 [NOXV]
1832
1756
-
Asn
GTT
[ENA]
¡û
>W2011616470
SKBP01000004
Bacteroidota
Flavobacterium sp. SaA2.12 [SKBP]
19975
19901
-
Asn
GTT
[ENA]
¡û
>W2012030196
VHIF01000001
Bacteroidota
Arenibacter palladensis MAR_2009_79 [VHIF]
3952535
3952461
-
Asn
GTT
[ENA]
¡û
>W2012040405
VIQP01000001
Bacteroidota
Cellulophaga baltica 14 [VIQP]
534897
534823
-
Asn
GTT
[ENA]
¡û
>W2012107300
VORP01000015
Bacteroidota
Polaribacter glomeratus ACAM 171 [VORP]
70257
70183
-
Asn
GTT
[ENA]
¡û
>W2012433824
WTFG01000010
Bacteroidota
Flavobacteriaceae bacterium Ap0902 [WTFG]
34033
34107
+
Asn
GTT
[ENA]
¡û
>W2012435366
WTLE01000022
Bacteroidota
Cellulophaga sp. Z1A5H [WTLE]
86823
86897
+
Asn
GTT
[ENA]
¡û
>W2012444935
WUMN01000006
Bacteroidota
Flavobacterium sp. Sd200 [WUMN]
17119
17193
+
Asn
GTT
[ENA]
¡û
>W2012470870
WWEP01000011
Bacteroidota
Flavobacterium sp. MK4S-17 [WWEP]
75132
75058
-
Asn
GTT
[ENA]
¡û
>W2110047175
BMXB01000014
Bacteroidota
Salinimicrobium marinum KCTC 12719 [BMXB]
54512
54586
+
Asn
GTT
[ENA]
¡û
>W2110296946
JADAKH010000004
Bacteroidota
Flavobacterium sp. SaA2.13 [JADAKH]
246771
246845
+
Asn
GTT
[ENA]
¡û
>W2110371229
JADPRW010000030
Bacteroidota
Cellulophaga sp. E16_2 [JADPRW]
88834
88908
+
Asn
GTT
[ENA]
¡û
>C201113124
CP042476
Bacteroidota
Antarcticibacterium sp. PAMC 28998 [CP042476]
2876923
2876997
+
Asn
GTT
-
¡û
>C211118279
CP058988
Bacteroidota
Cellulophaga sp. HaHa_2_95 [CP058988]
163783
163709
-
Asn
GTT
-
¡û
>C211118286
CP058989
Bacteroidota
Cellulophaga sp. HaHa_2_1 [CP058989]
3331559
3331633
+
Asn
GTT
-
¡û
>C211118338
CP058990
Bacteroidota
Cellulophaga sp. HaHaR_3_176 [CP058990]
3529812
3529886
+
Asn
GTT
-
¡û
>C231009381
AP025185
Bacteroidota
Flavobacterium ammonificans SHINM13 [AP025185]
738723
738797
+
Asn
GTT
-
¡û
>C231270804
CP090145
Bacteroidota
Flavobacterium sediminilitoris YSM-43 [CP090145]
1282673
1282599
-
Asn
GTT
-
¡û
>C231289086
CP091036
Bacteroidota
Antarcticibacterium sp. 1MA-6-2 [CP091036]
3120650
3120724
+
Asn
GTT
-
¡û
>C231320444
CP092597
Bacteroidota
Cellulophaga baltica 4 [CP092597]
2617467
2617393
-
Asn
GTT
-
¡û
>C231525335
CP110010
Bacteroidota
Flavobacterium sp. N501239 [CP110010]
1282659
1282585
-
Asn
GTT
-
¡û
>C241114931
CP047027
Bacteroidota
Cellulophaga sp. L1A9 [CP047027]
2214798
2214872
+
Asn
GTT
-
¡û
>C241199135
CP107030
Bacteroidota
Maribacter halichondriae Hal144 [CP107030]
2250909
2250983
+
Asn
GTT
-
¡û
>C11104703
CP002453
Bacteroidota
Cellulophaga algicola DSM 14237 [CP002453]
2047021
2047095
+
Asn
GTT
[Ensembl]
¡û
>W1511320913
JQCT01000001
Bacteroidota
Cellulophaga sp. E6(2014) E6[2014] [JQCT]
527037
526963
-
Asn
GTT
[ENA]
¡û
>W1511433228
JUHB01000001
Bacteroidota
Cellulophaga sp. Hel_I_12 [JUHB]
2745340
2745414
+
Asn
GTT
[ENA]
¡û
>W1511526843
JYGZ01000004
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
427223
427299
+
Asn
GTT
[ENA]
¡û
>W1511526844
JYGZ01000004
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
427356
427430
+
Asn
GTT
[ENA]
¡û
>W121034546
AHKR01000028
Bacteroidota
Gillisia limnaea DSM 15749 [AHKR]
208643
208719
+
Asn
GTT
[ENA]
¡û
>W1610082683
BDGL01000007
Bacteroidota
Arenibacter sp. NBRC 103722 C-21 [BDGL]
368444
368518
+
Asn
GTT
[ENA]
¡û
>W1610507299
FLSS01000014
Bacteroidota
Elizabethkingia miricola [FLSS]
577401
577476
+
Asn
GTT
[ENA]
¡û
>W1610910584
LSGQ01000032
Bacteroidota
Elizabethkingia miricola [LSGQ]
57398
57473
+
Asn
GTT
[ENA]
¡û
>W1710081857
BDGL01000007
Bacteroidota
Arenibacter sp. NBRC 103722 C-21 [BDGL]
368444
368518
+
Asn
GTT
[ENA]
¡û
>W1710499517
FLSS01000014
Bacteroidota
Elizabethkingia miricola [FLSS]
577401
577476
+
Asn
GTT
[ENA]
¡û
>W1710514673
FNBD01000001
Bacteroidota
Cellulophaga baltica [FNBD]
567760
567686
-
Asn
GTT
[ENA]
¡û
>W1710574137
FOYA01000030
Bacteroidota
Flavobacterium akiainvivens [FOYA]
6914
6990
+
Asn
GTT
[ENA]
¡û
>W1710606132
FWXO01000001
Bacteroidota
Cellulophaga tyrosinoxydans [FWXO]
629254
629180
-
Asn
GTT
[ENA]
¡û
>W1710606307
FWXS01000001
Bacteroidota
Moheibacter sediminis [FWXS]
260378
260452
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK