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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.168330 (16 seq.)
>w027465
ABCE01000089
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
2594
2672
+
Cys
GCA
[ENA]
¡û
>WENV170014906
AZIC01004302
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
2911
2985
+
Cys
GCA
[ENA]
¡û
>WENV170121142
CENL01054024
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
134779
134705
-
Cys
GCA
[ENA]
¡û
>WENV170621818
FUWD013074293
[FUWD] metagenome; unknown
1115
1189
+
Cys
GCA
[ENA]
¡û
>WENV170630020
FUWD013289851
[FUWD] metagenome; unknown
1115
1189
+
Cys
GCA
[ENA]
¡û
>WENV170668033
LADL02000387
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
646
572
-
Cys
GCA
[ENA]
¡û
>SRA1027156
SRR035086.72734
454 Sequencing (SRP001807)
119
45
-
Cys
GCA
[SRA]
>SRA1027429
SRR035086.124060
454 Sequencing (SRP001807)
120
46
-
Cys
GCA
[SRA]
>SRA1028631
SRR035086.378649
454 Sequencing (SRP001807)
43
117
+
Cys
GCA
[SRA]
>W2012143774
VTSR01000032
Planctomycetota
Gimesia sp. JC646 [VTSR]
639756
639682
-
Cys
GCA
[ENA]
¡û
>C241044059
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
2984931
2984857
-
Cys
GCA
-
¡û
>C241044475
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
1886228
1886302
+
Cys
GCA
-
¡û
>C241044577
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
2922467
2922393
-
Cys
GCA
-
¡û
>C241069966
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
2954050
2953976
-
Cys
GCA
-
¡û
>C241083554
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
747154
747228
+
Cys
GCA
-
¡û
>C241083624
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
4745122
4745196
+
Cys
GCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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