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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.168332 (12 seq.)
>w027433
ABCE01000012
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
169949
170027
+
Pro
GGG
[ENA]
¡û
>WENV170121090
CENL01049047
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
54661
54587
-
Pro
GGG
[ENA]
¡û
>WENV170475230
CEVH01293113
[CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
452
526
+
Pro
GGG
[ENA]
¡û
>WENV170805347
MDSW01063294
[MDSW] marine metagenome; seawater
2380
2454
+
Pro
GGG
[ENA]
¡û
>SRA1027178
SRR035086.75417
454 Sequencing (SRP001807)
123
197
+
Pro
GGG
[SRA]
>W2012143722
VTSR01000001
Planctomycetota
Gimesia sp. JC646 [VTSR]
609607
609681
+
Pro
GGG
[ENA]
¡û
>C241044062
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
1826061
1825987
-
Pro
GGG
-
¡û
>C241044478
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
3086450
3086524
+
Pro
GGG
-
¡û
>C241044579
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
1842695
1842621
-
Pro
GGG
-
¡û
>C241069968
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
1860899
1860825
-
Pro
GGG
-
¡û
>C241083557
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
2023911
2023985
+
Pro
GGG
-
¡û
>C241083626
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
5838552
5838626
+
Pro
GGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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