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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.168335 (15 seq.)
>w027462
ABCE01000060
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
17279
17203
-
Arg
CCG
[ENA]
¡û
>WENV170014941
AZIC01004874
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
5137
5064
-
Arg
CCG
[ENA]
¡û
>WENV170121144
CENL01054026
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
297915
297988
+
Arg
CCG
[ENA]
¡û
>WENV170605063
FUWD010446136
[FUWD] metagenome; unknown
100
173
+
Arg
CCG
[ENA]
¡û
>WENV170668354
LADL02003220
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
5582
5509
-
Arg
CCG
[ENA]
¡û
>SRA1027258
SRR035086.91433
454 Sequencing (SRP001807)
292
219
-
Arg
CCG
[SRA]
>SRA1027408
SRR035086.120212
454 Sequencing (SRP001807)
110
183
+
Arg
CCG
[SRA]
>SRA1028755
SRR035086.426029
454 Sequencing (SRP001807)
84
10
-
Arg
CCG
[SRA]
>W2012143747
VTSR01000007
Planctomycetota
Gimesia sp. JC646 [VTSR]
26241
26315
+
Arg
CCG
[ENA]
¡û
>C241044025
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
3498978
3499052
+
Arg
CCG
-
¡û
>C241044519
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
1356314
1356241
-
Arg
CCG
-
¡û
>C241044544
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
3479048
3479121
+
Arg
CCG
-
¡û
>C241069933
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
3590678
3590751
+
Arg
CCG
-
¡û
>C241083602
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
272529
272455
-
Arg
CCG
-
¡û
>C241083646
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
4108511
4108438
-
Arg
CCG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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