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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.168340 (34 seq.)
>W1711081951
LSTH01000211
Planctomycetota
Planctomyces sp. SCGC AG-212-M04 [LSTH]
8834
8908
+
Ile
GAT
[ENA]
¡û
>w027419
ABCE01000005
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
255334
255258
-
Ile
GAT
[ENA]
¡û
>WENV180285837
OBID01749644
[OBID] metagenome; sludge
112
186
+
Ile
GAT
[ENA]
¡û
>WENV180343871
OBLK01118944
[OBLK] soil metagenome; Clay
341
267
-
Ile
GAT
[ENA]
¡û
>WENV180352471
OBLQ010262931
[OBLQ] soil metagenome; soil
369
294
-
Ile
GAT
[ENA]
¡û
>WENV180356360
OBNK01018115
[OBNK] sediment metagenome; sediment
233
307
+
Ile
GAT
[ENA]
¡û
>WENV181173139
OEIV011229504
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
145
218
+
Ile
GAT
[ENA]
¡û
>WENV181228004
OFDN01103750
[OFDN] hot springs metagenome; Water
300
225
-
Ile
GAT
[ENA]
¡û
>WENV183627930
OOGL01082795
[OOGL] marine metagenome; sea ice
378
452
+
Ile
GAT
[ENA]
¡û
>WENV183726308
PJQF01157243
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
94
167
+
Ile
GAT
[ENA]
¡û
>WENV170014893
AZIC01003069
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
3247
3174
-
Ile
GAT
[ENA]
¡û
>WENV170121008
CENL01037920
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
175960
175887
-
Ile
GAT
[ENA]
¡û
>WENV170227362
CEQF01075106
[CEQF] marine metagenome genome assembly TARA_068_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
206
280
+
Ile
GAT
[ENA]
¡û
>WENV170603319
FUWD010301585
[FUWD] metagenome; unknown
354
281
-
Ile
GAT
[ENA]
¡û
>WENV170609952
FUWD011593277
[FUWD] metagenome; unknown
243
170
-
Ile
GAT
[ENA]
¡û
>WENV170908131
MDTE01060770
[MDTE] marine metagenome; seawater
955
881
-
Ile
GAT
[ENA]
¡û
>WENV170911442
MDTE01105985
[MDTE] marine metagenome; seawater
8990
9064
+
Ile
GAT
[ENA]
¡û
>SRA1027430
SRR035086.124227
454 Sequencing (SRP001807)
259
186
-
Ile
GAT
[SRA]
>W2010502838
JAALXT010000006
Planctomycetota
Rubinisphaera sp. JC658 [JAALXT]
65800
65727
-
Ile
GAT
[ENA]
¡û
>W2011610637
SJPP01000001
Planctomycetota
Planctomycetes bacterium CA54 [SJPP]
1263260
1263186
-
Ile
GAT
[ENA]
¡û
>W2011676639
SRHE01000084
Planctomycetota
Planctomyces bekefii [SRHE]
5802
5728
-
Ile
GAT
[ENA]
¡û
>W2012143724
VTSR01000001
Planctomycetota
Gimesia sp. JC646 [VTSR]
279916
279843
-
Ile
GAT
[ENA]
¡û
>C241043944
CP036275
Planctomycetota
Maioricimonas rarisocia Mal4 [CP036275]
1850487
1850413
-
Ile
GAT
-
¡û
>C241043951
CP036276
Planctomycetota
Symmachiella dynata Mal52 [CP036276]
1040005
1040079
+
Ile
GAT
-
¡û
>C241044013
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
2208430
2208503
+
Ile
GAT
-
¡û
>C241044163
CP036281
Planctomycetota
Polystyrenella longa Pla110 [CP036281]
1941087
1941160
+
Ile
GAT
-
¡û
>C241044507
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
2709142
2709069
-
Ile
GAT
-
¡û
>C241044530
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
2162215
2162288
+
Ile
GAT
-
¡û
>C241069920
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
2180869
2180942
+
Ile
GAT
-
¡û
>C241083590
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
1648174
1648101
-
Ile
GAT
-
¡û
>C241083633
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
5518594
5518521
-
Ile
GAT
-
¡û
>C11116893
CP002546
Planctomycetota
Rubinisphaera brasiliensis DSM 5305 [CP002546]
5620677
5620601
-
Ile
GAT
[Ensembl]
¡û
>W11138336
AEIC01000019
Planctomycetota
Rubinisphaera brasiliensis DSM 5305 [AEIC]
643
567
-
Ile
GAT
[ENA]
¡û
>W1610920786
LSTH01000211
Planctomycetota
Planctomyces sp. SCGC AG-212-M04 [LSTH]
8834
8908
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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