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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.168341 (17 seq.)
>w027452
ABCE01000029
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
15325
15401
+
Arg
TCG
[ENA]
¡û
>WENV170015050
AZIC01019750
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
2831
2758
-
Arg
TCG
[ENA]
¡û
>WENV170121007
CENL01037920
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
209628
209702
+
Arg
TCG
[ENA]
¡û
>WENV170622001
FUWD013083381
[FUWD] metagenome; unknown
733
806
+
Arg
TCG
[ENA]
¡û
>WENV170630204
FUWD013298570
[FUWD] metagenome; unknown
733
806
+
Arg
TCG
[ENA]
¡û
>SRA1027459
SRR035086.127444
454 Sequencing (SRP001807)
89
162
+
Arg
TCG
[SRA]
>SRA1027889
SRR035086.213040
454 Sequencing (SRP001807)
350
423
+
Arg
TCG
[SRA]
>W2011610931
SJPV01000004
Planctomycetota
Planctomycetes bacterium Poly41 [SJPV]
419407
419481
+
Arg
TCG
[ENA]
¡û
>W2012136391
VSZO01000001
Planctomycetota
Rhodopirellula sp. JC635 [VSZO]
87568
87495
-
Arg
TCG
[ENA]
¡û
>W2012143721
VTSR01000001
Planctomycetota
Gimesia sp. JC646 [VTSR]
318655
318729
+
Arg
TCG
[ENA]
¡û
>W2012426330
WRPS01000011
Planctomycetota
Rhodopirellula sp. JC637 [WRPS]
87474
87401
-
Arg
TCG
[ENA]
¡û
>C241044061
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
2166454
2166380
-
Arg
TCG
-
¡û
>C241044477
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
2753737
2753811
+
Arg
TCG
-
¡û
>C241044578
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
2128663
2128590
-
Arg
TCG
-
¡û
>C241069967
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
2147319
2147246
-
Arg
TCG
-
¡û
>C241083556
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
1685900
1685975
+
Arg
TCG
-
¡û
>C241083625
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
5552141
5552214
+
Arg
TCG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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