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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16849 (60 seq.)
>W1710876946
LMPR01000015
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
878
788
-
Ser
GGA
[ENA]
¡û
>W1710877099
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76023
76113
+
Ser
GGA
[ENA]
¡û
>W1710909375
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
637
727
+
Ser
GGA
[ENA]
¡û
>W1711116986
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774931
774841
-
Ser
GGA
[ENA]
¡û
>W1711166797
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
1983439
1983349
-
Ser
GGA
[ENA]
¡û
>W131241558
BARY01000009
Bacillota
Exiguobacterium sp. OS-77 [BARY]
928922
928832
-
Ser
GGA
[ENA]
¡û
>W1711507264
MKXO01000001
Bacillota
Exiguobacterium aurantiacum [MKXO]
1158376
1158286
-
Ser
GGA
[ENA]
¡û
>W1711589639
MOEL01000005
Bacillota
Exiguobacterium sp. AT1b [MOEL]
383
473
+
Ser
GGA
[ENA]
¡û
>W1711603291
MOLV01000045
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
1202
1112
-
Ser
GGA
[ENA]
¡û
>W1711632633
MPSZ01000001
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
250
340
+
Ser
GGA
[ENA]
¡û
>W1711676361
MRSV01000001
Bacillota
Exiguobacterium profundum [MRSV]
2621172
2621082
-
Ser
GGA
[ENA]
¡û
>W1711713099
MTCT01000008
Bacillota
Exiguobacterium sp. HVEsp1 [MTCT]
1464
1554
+
Ser
GGA
[ENA]
¡û
>W1712017221
NESR01000001
Bacillota
Kurthia gibsonii [NESR]
130
220
+
Ser
GGA
[ENA]
¡û
>C171040549
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
1162120
1162210
+
Ser
GGA
-
¡û
>C171072130
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
723472
723562
+
Ser
GGA
-
¡û
>W131202753
ASXD01000105
Bacillota
Exiguobacterium sp. S17 [ASXD]
277
367
+
Ser
GGA
[ENA]
¡û
>W131205095
ATCL01000006
Bacillota
Exiguobacterium chiriqhucha RW2 [ATCL]
183
93
-
Ser
GGA
[ENA]
¡û
>w003675
AADW02000015
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
54407
54499
+
Ser
GGA
[ENA]
¡û
>w003631
AADW02000003
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
280176
280084
-
Ser
GGA
[ENA]
¡û
>W08009416
ABPF01000072
Bacillota
Exiguobacterium sp. AT1b [ABPF]
3214
3127
-
Ser
GGA
[ENA]
¡û
>C08004803
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
704064
704154
+
Ser
GGA
[Ensembl]
¡û
>WENV170022616
BCQK01026944
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
226
316
+
Ser
GGA
[ENA]
¢þ
>W141484750
JFYW01000001
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
1688083
1687993
-
Ser
GGA
[ENA]
¡û
>C191181510
CP040676
Bacillota
Exiguobacterium mexicanum A-EM [CP040676]
2074087
2073997
-
Ser
GGA
-
¡û
>W141563064
JHZS01000002
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
2090821
2090731
-
Ser
GGA
[ENA]
¡û
>W141563137
JHZT01000003
Bacillota
Exiguobacterium marinum DSM 16307 [JHZT]
2043173
2043083
-
Ser
GGA
[ENA]
¡û
>W141563197
JHZU01000006
Bacillota
Exiguobacterium undae 190-11 [JHZU]
999418
999328
-
Ser
GGA
[ENA]
¡û
>W141563244
JHZV01000005
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
1001851
1001761
-
Ser
GGA
[ENA]
¡û
>W141620181
JJMW01000033
Bacillota
Exiguobacterium alkaliphilum 12·î1Æü [JJMW]
406
496
+
Ser
GGA
[ENA]
¡û
>W141701539
JMKS01000005
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
238887
238977
+
Ser
GGA
[ENA]
¡û
>W141726050
JNAA01000089
Bacillota
Exiguobacterium sp. AB2 [JNAA]
295
385
+
Ser
GGA
[ENA]
¡û
>W141730825
JNIP01000001
Bacillota
Exiguobacterium chiriqhucha GIC31 [JNIP]
2217288
2217198
-
Ser
GGA
[ENA]
¡û
>W141730874
JNIQ01000001
Bacillota
Exiguobacterium aurantiacum DSM 6208 [JNIQ]
2697654
2697564
-
Ser
GGA
[ENA]
¡û
>W141730910
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
282529
282619
+
Ser
GGA
[ENA]
¡û
>W141731012
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
2286864
2286954
+
Ser
GGA
[ENA]
¡û
>W141807042
JPOD01000001
Bacillota
Exiguobacterium sp. NG55 [JPOD]
225229
225319
+
Ser
GGA
[ENA]
¡û
>C141009933
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
677344
677434
+
Ser
GGA
[Ensembl]
¡û
>C09106148
CP001615
Bacillota
Exiguobacterium sp. AT1b [CP001615]
2380576
2380666
+
Ser
GGA
[Ensembl]
¡û
>W1911770651
QXJB01000001
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
106
196
+
Ser
GGA
[ENA]
¡û
>W1810760517
QPKF01000001
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
1893521
1893431
-
Ser
GGA
[ENA]
¡û
>W1810823278
QSGS01000035
Bacillota
Exiguobacterium sp. AM39-5BH [QSGS]
216
306
+
Ser
GGA
[ENA]
¡û
>W1511325281
JQGI01000013
Bacillota
Exiguobacterium mexicanum HUD [JQGI]
137
227
+
Ser
GGA
[ENA]
¡û
>W1511403346
JTLB01000007
Bacillota
Exiguobacterium sp. ZOR0005 [JTLB]
41061
40971
-
Ser
GGA
[ENA]
¡û
>W1511403815
JTLL01000034
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
266
176
-
Ser
GGA
[ENA]
¡û
>W1511638499
LDNY01000001
Bacillota
Exiguobacterium sp. JLM-2 [LDNY]
2092876
2092786
-
Ser
GGA
[ENA]
¡û
>W1511686071
LFQN01000017
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
41480
41390
-
Ser
GGA
[ENA]
¡û
>W1511699982
LGIW01000015
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
82
172
+
Ser
GGA
[ENA]
¡û
>C131001816
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
662413
662503
+
Ser
GGA
[Ensembl]
¡û
>W1610521251
JMEH01000011
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
580
670
+
Ser
GGA
[ENA]
¡û
>W1610589623
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
337
427
+
Ser
GGA
[ENA]
¡û
>W1610589654
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
124
214
+
Ser
GGA
[ENA]
¡û
>W1610739292
LMPR01000015
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
878
788
-
Ser
GGA
[ENA]
¡û
>W1610739445
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76023
76113
+
Ser
GGA
[ENA]
¡û
>W1610767734
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
637
727
+
Ser
GGA
[ENA]
¡û
>W1610928345
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774931
774841
-
Ser
GGA
[ENA]
¡û
>W1610977337
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
1983439
1983349
-
Ser
GGA
[ENA]
¡û
>W1710511210
FMYN01000002
Bacillota
Exiguobacterium enclense [FMYN]
637
727
+
Ser
GGA
[ENA]
¡û
>W1710619731
JMEH01000011
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
580
670
+
Ser
GGA
[ENA]
¡û
>W1710708903
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
337
427
+
Ser
GGA
[ENA]
¡û
>W1710708934
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
124
214
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK