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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169172 (74 seq.)
>W131229114
AUGN01000008
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
109347
109423
+
Thr
TGT
[ENA]
¡û
>W131236234
AUMF01000019
Bacteroidota
Tenacibaculum ovolyticum DSM 18103 [AUMF]
75732
75658
-
Thr
TGT
[ENA]
¡û
>W131236241
AUMF01000021
Bacteroidota
Tenacibaculum ovolyticum DSM 18103 [AUMF]
63187
63113
-
Thr
TGT
[ENA]
¡û
>WENV180593868
OCOY01001323
[OCOY] marine metagenome; ENVO:00002010
2519
2593
+
Thr
TGT
[ENA]
¡û
>WENV180637419
OCRG01019871
[OCRG] marine metagenome; seawater
403
479
+
Thr
TGT
[ENA]
¡û
>WENV181120671
OEFK01029977
[OEFK] marine metagenome; ENVO:00002010 seawater
97
173
+
Thr
TGT
[ENA]
¡û
>WENV170123046
CENO01015811
[CENO] marine metagenome genome assembly TARA_033_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2634
2710
+
Thr
TGT
[ENA]
¡û
>WENV170156676
CEOJ01003920
[CEOJ] marine metagenome genome assembly TARA_034_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
414
338
-
Thr
TGT
[ENA]
¡û
>WENV170304560
CESI01055504
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
200
124
-
Thr
TGT
[ENA]
¡û
>WENV170559632
CXWL01134340
[CXWL] groundwater metagenome; biofilm material
1148
1222
+
Thr
TGT
[ENA]
¡û
>W1910728183
MGWJ01000035
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7 [MGWJ]
5835
5761
-
Thr
TGT
[ENA]
¡û
>W1911243224
NSGJ01000001
Bacteroidota
Myroides sp. N17-2 [NSGJ]
145039
144965
-
Thr
TGT
[ENA]
¡û
>W1911243252
NSGJ01000024
Bacteroidota
Myroides sp. N17-2 [NSGJ]
46323
46249
-
Thr
TGT
[ENA]
¡û
>W1911243253
NSGJ01000024
Bacteroidota
Myroides sp. N17-2 [NSGJ]
46208
46134
-
Thr
TGT
[ENA]
¡û
>W1911243254
NSGJ01000024
Bacteroidota
Myroides sp. N17-2 [NSGJ]
46091
46017
-
Thr
TGT
[ENA]
¡û
>W1911243256
NSGJ01000024
Bacteroidota
Myroides sp. N17-2 [NSGJ]
45859
45785
-
Thr
TGT
[ENA]
¡û
>W1911243257
NSGJ01000024
Bacteroidota
Myroides sp. N17-2 [NSGJ]
45749
45675
-
Thr
TGT
[ENA]
¡û
>W2010490060
JAAJBT010000001
Bacteroidota
Flavobacterium sp. KDG-16 [JAAJBT]
468354
468428
+
Thr
TGT
[ENA]
¡û
>W2010490094
JAAJBT010000011
Bacteroidota
Flavobacterium sp. KDG-16 [JAAJBT]
14730
14656
-
Thr
TGT
[ENA]
¡û
>W2010490095
JAAJBT010000011
Bacteroidota
Flavobacterium sp. KDG-16 [JAAJBT]
14582
14508
-
Thr
TGT
[ENA]
¡û
>W2010522768
JAANOQ010000004
Bacteroidota
Flavobacterium sp. F372 [JAANOQ]
93484
93558
+
Thr
TGT
[ENA]
¡û
>W2010522783
JAANOQ010000009
Bacteroidota
Flavobacterium sp. F372 [JAANOQ]
57725
57799
+
Thr
TGT
[ENA]
¡û
>W2010522784
JAANOQ010000009
Bacteroidota
Flavobacterium sp. F372 [JAANOQ]
57871
57945
+
Thr
TGT
[ENA]
¡û
>W2010861612
MGWJ01000035
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7 [MGWJ]
5835
5761
-
Thr
TGT
[ENA]
¡û
>W2011068532
NSGJ01000001
Bacteroidota
Myroides sp. N17-2 [NSGJ]
145039
144965
-
Thr
TGT
[ENA]
¡û
>W2011068560
NSGJ01000024
Bacteroidota
Myroides sp. N17-2 [NSGJ]
46323
46249
-
Thr
TGT
[ENA]
¡û
>W2011068561
NSGJ01000024
Bacteroidota
Myroides sp. N17-2 [NSGJ]
46208
46134
-
Thr
TGT
[ENA]
¡û
>W2011068562
NSGJ01000024
Bacteroidota
Myroides sp. N17-2 [NSGJ]
46091
46017
-
Thr
TGT
[ENA]
¡û
>W2011068564
NSGJ01000024
Bacteroidota
Myroides sp. N17-2 [NSGJ]
45859
45785
-
Thr
TGT
[ENA]
¡û
>W2011068565
NSGJ01000024
Bacteroidota
Myroides sp. N17-2 [NSGJ]
45749
45675
-
Thr
TGT
[ENA]
¡û
>W2011160744
OENE01000010
Bacteroidota
Tenacibaculum finnmarkense TNO010 [OENE]
58434
58360
-
Thr
TGT
[ENA]
¡û
>W2011160762
OENE01000015
Bacteroidota
Tenacibaculum finnmarkense TNO010 [OENE]
59012
58938
-
Thr
TGT
[ENA]
¡û
>W2011162739
OESZ01000002
Bacteroidota
Tenacibaculum dicentrarchi TDCHD05 [OESZ]
55234
55308
+
Thr
TGT
[ENA]
¡û
>W2011162766
OESZ01000044
Bacteroidota
Tenacibaculum dicentrarchi TDCHD05 [OESZ]
46731
46805
+
Thr
TGT
[ENA]
¡û
>W2011354402
RAPQ01000012
Bacteroidota
Marinifilum flexuosum DSM 21950 [RAPQ]
306917
306991
+
Thr
TGT
[ENA]
¡û
>W2011354403
RAPQ01000012
Bacteroidota
Marinifilum flexuosum DSM 21950 [RAPQ]
307060
307135
+
Thr
TGT
[ENA]
¡û
>W2011481096
RQVQ01000013
Bacteroidota
Flavobacterium sp. YIM 102701-2 [RQVQ]
27337
27411
+
Thr
TGT
[ENA]
¡û
>W2011513079
RZNH01000029
Bacteroidota
Marinifilum sp. JC070 [RZNH]
22397
22323
-
Thr
TGT
[ENA]
¡û
>W2011513080
RZNH01000029
Bacteroidota
Marinifilum sp. JC070 [RZNH]
22152
22078
-
Thr
TGT
[ENA]
¡û
>W2011588648
SIHP01000001
Bacteroidota
Flavobacteriaceae bacterium Hp32 [SIHP]
708288
708362
+
Thr
TGT
[ENA]
¡û
>W2011588651
SIHP01000001
Bacteroidota
Flavobacteriaceae bacterium Hp32 [SIHP]
631691
631617
-
Thr
TGT
[ENA]
¡û
>W2110249071
JACRUN010000003
Bacteroidota
Flavobacterium bernardetii F-408 [JACRUN]
94168
94242
+
Thr
TGT
[ENA]
¡û
>W2110249096
JACRUN010000010
Bacteroidota
Flavobacterium bernardetii F-408 [JACRUN]
49388
49314
-
Thr
TGT
[ENA]
¡û
>W2110249097
JACRUN010000010
Bacteroidota
Flavobacterium bernardetii F-408 [JACRUN]
49242
49168
-
Thr
TGT
[ENA]
¡û
>W2110575701
JAGUCN010000027
Bacteroidota
Carboxylicivirga mesophila JCM 18290 [JAGUCN]
35191
35265
+
Thr
TGT
[ENA]
¡û
>W2110575703
JAGUCN010000027
Bacteroidota
Carboxylicivirga mesophila JCM 18290 [JAGUCN]
35408
35482
+
Thr
TGT
[ENA]
¡û
>W2110597833
JAHEQE010000001
Bacteroidota
Tenacibaculum dicentrarchi QCR41 [JAHEQE]
919686
919760
+
Thr
TGT
[ENA]
¡û
>W2110597865
JAHEQE010000009
Bacteroidota
Tenacibaculum dicentrarchi QCR41 [JAHEQE]
31435
31361
-
Thr
TGT
[ENA]
¡û
>C231293514
CP091285
Bacteroidota
Flavobacterium jumunjinense HME7102 [CP091285]
2565165
2565239
+
Thr
TGT
-
¡û
>C231293568
CP091285
Bacteroidota
Flavobacterium jumunjinense HME7102 [CP091285]
134693
134619
-
Thr
TGT
-
¡û
>C231293569
CP091285
Bacteroidota
Flavobacterium jumunjinense HME7102 [CP091285]
134491
134417
-
Thr
TGT
-
¡û
>C231524781
CP109996
Bacteroidota
Flavobacterium sp. N1861 [CP109996]
134217
134143
-
Thr
TGT
-
¡û
>C231524782
CP109996
Bacteroidota
Flavobacterium sp. N1861 [CP109996]
134015
133941
-
Thr
TGT
-
¡û
>C241115320
CP047050
Bacteroidota
Myroides phaeus 18QD1AZ29W [CP047050]
491620
491546
-
Thr
TGT
-
¡û
>C241115333
CP047050
Bacteroidota
Myroides phaeus 18QD1AZ29W [CP047050]
247669
247595
-
Thr
TGT
-
¡û
>C241115334
CP047050
Bacteroidota
Myroides phaeus 18QD1AZ29W [CP047050]
247554
247480
-
Thr
TGT
-
¡û
>C241115335
CP047050
Bacteroidota
Myroides phaeus 18QD1AZ29W [CP047050]
247430
247356
-
Thr
TGT
-
¡û
>C241115336
CP047050
Bacteroidota
Myroides phaeus 18QD1AZ29W [CP047050]
247312
247238
-
Thr
TGT
-
¡û
>W2110803896
WXXU01000001
Bacteroidota
Tenacibaculum finnmarkense genomovar ulcerans TNO032 [WXXU]
172890
172816
-
Thr
TGT
[ENA]
¡û
>W2110803916
WXXU01000007
Bacteroidota
Tenacibaculum finnmarkense genomovar ulcerans TNO032 [WXXU]
65188
65262
+
Thr
TGT
[ENA]
¡û
>W2110804325
WXYD01000004
Bacteroidota
Tenacibaculum finnmarkense genomovar ulcerans TNO075 [WXYD]
164177
164103
-
Thr
TGT
[ENA]
¡û
>W2110804343
WXYD01000007
Bacteroidota
Tenacibaculum finnmarkense genomovar ulcerans TNO075 [WXYD]
71387
71313
-
Thr
TGT
[ENA]
¡û
>W1610080930
BDCW01000021
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
65115
65041
-
Thr
TGT
[ENA]
¡û
>W1610080942
BDCW01000035
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
77941
77867
-
Thr
TGT
[ENA]
¡û
>W1710079581
BDCW01000021
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
65115
65041
-
Thr
TGT
[ENA]
¡û
>W1710079593
BDCW01000035
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
77941
77867
-
Thr
TGT
[ENA]
¡û
>W1710517846
FNDQ01000002
Bacteroidota
Myroides phaeus [FNDQ]
159512
159588
+
Thr
TGT
[ENA]
¡û
>W1710517921
FNDQ01000044
Bacteroidota
Myroides phaeus [FNDQ]
600
524
-
Thr
TGT
[ENA]
¡û
>W1710517922
FNDQ01000044
Bacteroidota
Myroides phaeus [FNDQ]
485
409
-
Thr
TGT
[ENA]
¡û
>W1710517923
FNDQ01000044
Bacteroidota
Myroides phaeus [FNDQ]
366
290
-
Thr
TGT
[ENA]
¡û
>W1710517924
FNDQ01000044
Bacteroidota
Myroides phaeus [FNDQ]
248
172
-
Thr
TGT
[ENA]
¡û
>W1710541055
FNYA01000002
Bacteroidota
Flavobacterium terrigena [FNYA]
209937
209863
-
Thr
TGT
[ENA]
¡û
>W1710541077
FNYA01000010
Bacteroidota
Flavobacterium terrigena [FNYA]
55066
55142
+
Thr
TGT
[ENA]
¡û
>W1710566228
FORU01000003
Bacteroidota
Myroides guanonis [FORU]
77385
77311
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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