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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169173 (21 seq.)
>W131229113
AUGN01000007
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
134893
134967
+
Arg
TCG
[ENA]
¡û
>WENV180038858
LLBY010008701
[LLBY] soil metagenome; soil from tomato rhizosphere
484
410
-
Arg
TCG
[ENA]
¡û
>WENV180040935
LLBZ010025722
[LLBZ] soil metagenome; soil from tomato rhizosphere
3411
3485
+
Arg
TCG
[ENA]
¡û
>WENV182563970
OJED01008817
[OJED] seawater metagenome; Sea water
364
290
-
Arg
TCG
[ENA]
¡û
>WENV170559397
CXWL01121600
[CXWL] groundwater metagenome; biofilm material
1123
1197
+
Arg
TCG
[ENA]
¡û
>W1910728191
MGWJ01000091
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7 [MGWJ]
6711
6637
-
Arg
TCG
[ENA]
¡û
>W2010490071
JAAJBT010000003
Bacteroidota
Flavobacterium sp. KDG-16 [JAAJBT]
188139
188213
+
Arg
TCG
[ENA]
¡û
>W2010522758
JAANOQ010000002
Bacteroidota
Flavobacterium sp. F372 [JAANOQ]
288911
288985
+
Arg
TCG
[ENA]
¡û
>W2010861620
MGWJ01000091
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7 [MGWJ]
6711
6637
-
Arg
TCG
[ENA]
¡û
>W2011980710
VDCZ01000003
Bacteroidota
Flavobacterium sp. TP390 [VDCZ]
121772
121698
-
Arg
TCG
[ENA]
¡û
>W2012011071
VEVQ02000007
Bacteroidota
Flavobacterium jejuense EC11 [VEVQ]
199063
199137
+
Arg
TCG
[ENA]
¡û
>W2012424935
WQLW01000003
Bacteroidota
Flavobacterium sp. TP390 [WQLW]
121772
121698
-
Arg
TCG
[ENA]
¡û
>W2110249084
JACRUN010000006
Bacteroidota
Flavobacterium bernardetii F-408 [JACRUN]
107725
107799
+
Arg
TCG
[ENA]
¡û
>C231270817
CP090145
Bacteroidota
Flavobacterium sediminilitoris YSM-43 [CP090145]
427152
427078
-
Arg
TCG
-
¡û
>C231293513
CP091285
Bacteroidota
Flavobacterium jumunjinense HME7102 [CP091285]
2319343
2319417
+
Arg
TCG
-
¡û
>C231524726
CP109996
Bacteroidota
Flavobacterium sp. N1861 [CP109996]
2293387
2293461
+
Arg
TCG
-
¡û
>C231525061
CP110005
Bacteroidota
Flavobacterium sp. N2270 [CP110005]
1214157
1214231
+
Arg
TCG
-
¡û
>C231525348
CP110010
Bacteroidota
Flavobacterium sp. N501239 [CP110010]
427146
427072
-
Arg
TCG
-
¡û
>W1511526825
JYGZ01000002
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
64318
64392
+
Arg
TCG
[ENA]
¡û
>W1710541074
FNYA01000007
Bacteroidota
Flavobacterium terrigena [FNYA]
100964
100888
-
Arg
TCG
[ENA]
¡û
>W1710549172
FOEI01000002
Bacteroidota
Flavobacterium urocaniciphilum [FOEI]
274351
274427
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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