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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169357 (27 seq.)
>W1710799047
LJUG01000015
Nitrospirota
Nitrospira bacterium SM23_35 [LJUG]
2115
2039
-
Arg
TCT
[ENA]
¡û
>W1711410210
MGPS01000023
Unclassified
Deltaproteobacteria bacterium GWC2_42_11 [MGPS]
596
672
+
Arg
TCT
[ENA]
¡û
>W1711416948
MHEE01000012
Nitrospirota
Nitrospirae bacterium GWF2_44_13 [MHEE]
4464
4388
-
Arg
TCT
[ENA]
¡û
>W1711417105
MHEJ01000093
Nitrospirota
Nitrospirae bacterium RBG_16_43_8 [MHEJ]
261
185
-
Arg
TCT
[ENA]
¡û
>W1711417167
MHEW01000033
Nitrospirota
Nitrospirae bacterium RIFOXYA2_FULL_44_9 [MHEW]
65499
65575
+
Arg
TCT
[ENA]
¡û
>W1711582316
MNVK01000133
Nitrospirota
Nitrospirae bacterium CG1_02_44_142 [MNVK]
5067
5143
+
Arg
TCT
[ENA]
¡û
>W1711584671
MNYU01000029
Nitrospirota
Nitrospirae bacterium CG2_30_41_42 [MNYU]
344
418
+
Arg
TCT
[ENA]
¡û
>WENV180354412
OBLQ011716939
[OBLQ] soil metagenome; soil
68
144
+
Arg
TCT
[ENA]
¡û
>WENV180356047
OBNJ01020874
[OBNJ] sediment metagenome; sediment
123
47
-
Arg
TCT
[ENA]
¡û
>WENV181239792
OFFD01008084
[OFFD] mouse gut metagenome; faeces
1847
1923
+
Arg
TCT
[ENA]
¡û
>WENV181247402
OFFK01023593
[OFFK] mouse gut metagenome; faeces
512
436
-
Arg
TCT
[ENA]
¡û
>WENV181257834
OFFU01006412
[OFFU] mouse gut metagenome; faeces
1970
1894
-
Arg
TCT
[ENA]
¡û
>WENV181263902
OFFZ01034793
[OFFZ] mouse gut metagenome; faeces
177
253
+
Arg
TCT
[ENA]
¡û
>WENV181271002
OFGF01003944
[OFGF] mouse gut metagenome; faeces
5499
5575
+
Arg
TCT
[ENA]
¡û
>WENV181272407
OFGG01010687
[OFGG] mouse gut metagenome; faeces
1023
947
-
Arg
TCT
[ENA]
¡û
>WENV181277787
OFGL01030578
[OFGL] mouse gut metagenome; faeces
209
133
-
Arg
TCT
[ENA]
¡û
>WENV181281350
OFGO01042003
[OFGO] mouse gut metagenome; faeces
165
241
+
Arg
TCT
[ENA]
¡û
>WENV181409802
OGCI01000666
[OGCI] hot springs metagenome; Hot spring water
33343
33419
+
Arg
TCT
[ENA]
¡û
>WENV181410043
OGCI01001263
[OGCI] hot springs metagenome; Hot spring water
21625
21700
+
Arg
TCT
[ENA]
¡û
>WENV181415582
OGCL01015500
[OGCL] hot springs metagenome; Hot spring water
1882
1958
+
Arg
TCT
[ENA]
¡û
>WENV182609060
OJJV01002378
[OJJV] metagenome; faeces
3813
3737
-
Arg
TCT
[ENA]
¡û
>WENV182621391
OJKI01098146
[OJKI] metagenome; faeces
372
296
-
Arg
TCT
[ENA]
¡û
>WENV183028335
OLFV01001828
[OLFV] human gut metagenome; faeces
12977
12901
-
Arg
TCT
[ENA]
¡û
>W1910744762
MIDI01000199
Nitrospirota
Thermodesulfovibrio sp. RBG_19FT_COMBO_42_12 [MIDI]
30428
30352
-
Arg
TCT
[ENA]
¡û
>W2010878194
MIDI01000199
Nitrospirota
Thermodesulfovibrio sp. RBG_19FT_COMBO_42_12 [MIDI]
30428
30352
-
Arg
TCT
[ENA]
¡û
>W1511600702
LBTZ01000007
Unclassified
Parcubacteria group bacterium GW2011_GWD2_38_11 GW2011_GWD2_38_11 [LBTZ]
4062
3986
-
Arg
TCT
[ENA]
¡û
>W1610663004
LJUG01000015
Nitrospirota
Nitrospira bacterium SM23_35 [LJUG]
2115
2039
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK