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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169397 (104 seq.)
>W1710806843
LKBN01002760
Gammaproteobacteria
Pseudomonas putida [LKBN]
203
279
+
Pro
CGG
[ENA]
¡û
>W1710875047
LMOC01000001
Gammaproteobacteria
Pseudomonas sp. Leaf129 [LMOC]
1337339
1337415
+
Pro
CGG
[ENA]
¡û
>W1710892233
LNDO01000044
Gammaproteobacteria
Pseudomonas sp. Ga0074129 [LNDO]
18911
18835
-
Pro
CGG
[ENA]
¡û
>W1710905607
LNNI01000025
Gammaproteobacteria
Pseudomonas putida rhizophila [LNNI]
681157
681081
-
Pro
CGG
[ENA]
¡û
>W1711019396
LQXW01000022
Gammaproteobacteria
Pseudomonas sp. ABFPK [LQXW]
59409
59485
+
Pro
CGG
[ENA]
¡û
>W1711089348
LSZO01000018
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
62234
62158
-
Pro
CGG
[ENA]
¡û
>W1712006891
NEIL01000001
Gammaproteobacteria
Pseudomonas sp. R11(2017) [NEIL]
67930
67854
-
Pro
CGG
[ENA]
¡û
>W1712007039
NEIN01000009
Gammaproteobacteria
Pseudomonas sp. B9(2017) [NEIN]
8020
7944
-
Pro
CGG
[ENA]
¡û
>W1712008512
NEJL01000011
Gammaproteobacteria
Pseudomonas sp. B24(2017) [NEJL]
122435
122359
-
Pro
CGG
[ENA]
¡û
>W1712008980
NEJS01000010
Gammaproteobacteria
Pseudomonas sp. B18(2017) [NEJS]
8058
7982
-
Pro
CGG
[ENA]
¡û
>W1712009123
NEJU01000017
Gammaproteobacteria
Pseudomonas sp. B10(2017) [NEJU]
117455
117531
+
Pro
CGG
[ENA]
¡û
>W1712049406
NFSB01000051
Gammaproteobacteria
Pseudomonas putida [NFSB]
6078
6002
-
Pro
CGG
[ENA]
¡û
>W1712096785
NIBE01000093
Gammaproteobacteria
Pseudomonas sp. DrBHI1 [NIBE]
10124
10048
-
Pro
CGG
[ENA]
¡û
>WENV170710696
LNFM01002408
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
18910
18834
-
Pro
CGG
[ENA]
¡û
>W1810580751
QETK01000013
Gammaproteobacteria
Pseudomonas sp. SDI [QETK]
122922
122846
-
Pro
CGG
[ENA]
¡û
>SRA1015916
SRR023846.260232
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
75
1
-
Pro
CGG
[SRA]
>W2010162734
CABEEI010000004
Gammaproteobacteria
Pseudomonas putida NCTC13185 [CABEEI]
401472
401396
-
Pro
CGG
[ENA]
¡û
>W2010541125
JAAQXQ010000001
Gammaproteobacteria
Pseudomonas peli DSM 17833 [JAAQXQ]
2225113
2225037
-
Pro
CGG
[ENA]
¡û
>W2010656948
JACAQQ010000049
Gammaproteobacteria
Pseudomonas putida IPO3752 [JACAQQ]
60127
60051
-
Pro
CGG
[ENA]
¡û
>W2010687374
JACGCV010000010
Gammaproteobacteria
Pseudomonas monteilii 13526 [JACGCV]
177543
177619
+
Pro
CGG
[ENA]
¡û
>W2010687724
JACGDA010000015
Gammaproteobacteria
Pseudomonas juntendi 11213 [JACGDA]
4242
4166
-
Pro
CGG
[ENA]
¡û
>W2010688149
JACGDG010000009
Gammaproteobacteria
Pseudomonas putida 12464 [JACGDG]
57488
57564
+
Pro
CGG
[ENA]
¡û
>W2011864536
UTAV01000001
Gammaproteobacteria
Pseudomonas sp. 286 [UTAV]
270915
270991
+
Pro
CGG
[ENA]
¡û
>W2011915635
UUJH01000001
Gammaproteobacteria
Pseudomonas sp. 286 [UUJH]
891848
891772
-
Pro
CGG
[ENA]
¡û
>W2110093971
CAJCIO010000036
Gammaproteobacteria
Gammaproteobacteria bacterium [CAJCIO]
597
521
-
Pro
CGG
[ENA]
¡û
>W2110147943
JAAOCC010000015
Gammaproteobacteria
Pseudomonas typographi C2L12B [JAAOCC]
113060
113136
+
Pro
CGG
[ENA]
¡û
>W2110192105
JABWRL010000024
Gammaproteobacteria
Pseudomonas mosselii RW5S2 [JABWRL]
58569
58645
+
Pro
CGG
[ENA]
¡û
>W2110192440
JABWSB020000007
Gammaproteobacteria
Pseudomonas kurunegalensis RW1P2 [JABWSB]
55769
55845
+
Pro
CGG
[ENA]
¡û
>W2110292282
JACYWW010000001
Gammaproteobacteria
Pseudomonas coleopterorum CFBP13575 [JACYWW]
655561
655637
+
Pro
CGG
[ENA]
¡û
>W2110292444
JACYWY010000007
Gammaproteobacteria
Pseudomonas coleopterorum CFBP13615 [JACYWY]
88963
88887
-
Pro
CGG
[ENA]
¡û
>W2110292463
JACYWZ010000001
Gammaproteobacteria
Pseudomonas coleopterorum CFBP13599 [JACYWZ]
906215
906139
-
Pro
CGG
[ENA]
¡û
>W2110331346
JADLJE010000014
Gammaproteobacteria
Pseudomonas fulva 20-MO00612-0 [JADLJE]
121151
121227
+
Pro
CGG
[ENA]
¡û
>W2110331568
JADLJH010000028
Gammaproteobacteria
Pseudomonas fulva 20-MO00615-0 [JADLJH]
4303
4227
-
Pro
CGG
[ENA]
¡û
>W2110331813
JADLJL010000018
Gammaproteobacteria
Pseudomonas guariconensis 20-MO00619-0 [JADLJL]
26358
26282
-
Pro
CGG
[ENA]
¡û
>W2110331912
JADLJN010000005
Gammaproteobacteria
Pseudomonas guariconensis 20-MO00621-0 [JADLJN]
105519
105443
-
Pro
CGG
[ENA]
¡û
>W2110332044
JADLJP010000010
Gammaproteobacteria
Pseudomonas guariconensis 20-MO00623-0 [JADLJP]
56981
56905
-
Pro
CGG
[ENA]
¡û
>W2110332180
JADLJR010000022
Gammaproteobacteria
Pseudomonas pudica 20-MO00627-0 [JADLJR]
34934
34858
-
Pro
CGG
[ENA]
¡û
>W2110382539
JADUCF010000021
Gammaproteobacteria
Pseudomonas asiatica PSB00026 [JADUCF]
54955
55031
+
Pro
CGG
[ENA]
¡û
>W2110382775
JADUCM010000004
Gammaproteobacteria
Pseudomonas alkylphenolica PSB00016 [JADUCM]
105725
105649
-
Pro
CGG
[ENA]
¡û
>W2110394258
JADWSX010000005
Gammaproteobacteria
Pseudomonas qingdaonensis ZCR6 [JADWSX]
291027
291103
+
Pro
CGG
[ENA]
¡û
>W2110414554
JAEHTK010000020
Gammaproteobacteria
Pseudomonas juntendi PSB00036 [JAEHTK]
13179
13103
-
Pro
CGG
[ENA]
¡û
>W2110446445
JAERTN020000017
Gammaproteobacteria
Pseudomonas fulva 4056 [JAERTN]
104087
104163
+
Pro
CGG
[ENA]
¡û
>W2110478649
JAFDQN010000014
Gammaproteobacteria
Pseudomonas fulva F8_1S_6B [JAFDQN]
132028
132104
+
Pro
CGG
[ENA]
¡û
>W2110479184
JAFDQW010000015
Gammaproteobacteria
Pseudomonas fulva F8_6S_12B [JAFDQW]
132028
132104
+
Pro
CGG
[ENA]
¡û
>W2110479426
JAFDRA010000016
Gammaproteobacteria
Pseudomonas fulva F8_6S_1P [JAFDRA]
4412
4336
-
Pro
CGG
[ENA]
¡û
>W2110479735
JAFDRF010000015
Gammaproteobacteria
Pseudomonas fulva F8_6S_7B [JAFDRF]
4412
4336
-
Pro
CGG
[ENA]
¡û
>W2110479981
JAFDRJ010000014
Gammaproteobacteria
Pseudomonas fulva F8_7S_11B [JAFDRJ]
132028
132104
+
Pro
CGG
[ENA]
¡û
>W2110480161
JAFDRT010000014
Gammaproteobacteria
Pseudomonas fulva F8_7S_2B [JAFDRT]
4412
4336
-
Pro
CGG
[ENA]
¡û
>W2110480283
JAFDRV010000014
Gammaproteobacteria
Pseudomonas fulva F8_7S_3B [JAFDRV]
4412
4336
-
Pro
CGG
[ENA]
¡û
>W2110480346
JAFDRW010000014
Gammaproteobacteria
Pseudomonas fulva F8_7S_3P [JAFDRW]
4412
4336
-
Pro
CGG
[ENA]
¡û
>W2110480718
JAFDSI010000015
Gammaproteobacteria
Pseudomonas fulva F8_8S_2B [JAFDSI]
4412
4336
-
Pro
CGG
[ENA]
¡û
>W2110532995
JAGFDU010000003
Gammaproteobacteria
Pseudomonas asiatica 15991 [JAGFDU]
135708
135784
+
Pro
CGG
[ENA]
¡û
>C201085988
CP040324
Gammaproteobacteria
Pseudomonas monteilii TCU-CK1 [CP040324]
1773322
1773246
-
Pro
CGG
-
¡û
>C201286755
CP056030
Gammaproteobacteria
Pseudomonas sp. NP-1 [CP056030]
2008990
2008914
-
Pro
CGG
-
¡û
>C211011174
AP023348
Gammaproteobacteria
Pseudomonas sp. RtIB026 [AP023348]
4262098
4262174
+
Pro
CGG
-
¡û
>C211145680
CP061335
Gammaproteobacteria
Pseudomonas asiatica C1 [CP061335]
2217676
2217600
-
Pro
CGG
-
¡û
>C211196035
CP064943
Gammaproteobacteria
Pseudomonas fulva ZDHY316 [CP064943]
1705415
1705339
-
Pro
CGG
-
¡û
>W2110708173
JAIWWB010000003
Gammaproteobacteria
Pseudomonas kurunegalensis 5344 [JAIWWB]
21536
21612
+
Pro
CGG
[ENA]
¡û
>C211281765
CP070982
Gammaproteobacteria
Pseudomonas entomophila Small [CP070982]
4106472
4106548
+
Pro
CGG
-
¡û
>C211294696
CP071706
Gammaproteobacteria
Pseudomonas donghuensis P482 [CP071706]
3991230
3991306
+
Pro
CGG
-
¡û
>C211332936
CP074676
Gammaproteobacteria
Pseudomonas qingdaonensis S-1 [CP074676]
4104318
4104394
+
Pro
CGG
-
¡û
>C211350337
CP077073
Gammaproteobacteria
Pseudomonas muyukensis COW39 [CP077073]
2510659
2510583
-
Pro
CGG
-
¡û
>C211350557
CP077076
Gammaproteobacteria
Pseudomonas fakonensis COW40 [CP077076]
1872809
1872733
-
Pro
CGG
-
¡û
>C211351711
CP077094
Gammaproteobacteria
Pseudomonas promysalinigenes RW10S1 [CP077094]
1631876
1631800
-
Pro
CGG
-
¡û
>C211351923
CP077097
Gammaproteobacteria
Pseudomonas anuradhapurensis RD8MR3 [CP077097]
1850840
1850764
-
Pro
CGG
-
¡û
>C211391172
CP081966
Gammaproteobacteria
Pseudomonas mosselii DSM 17497 [CP081966]
4176502
4176578
+
Pro
CGG
-
¡û
>C231045753
CP039127
Gammaproteobacteria
Pseudomonas sp. A2 [CP039127]
2048160
2048084
-
Pro
CGG
-
¡û
>C231171897
CP081491
Gammaproteobacteria
Pseudomonas sp. NEEL19 [CP081491]
3616468
3616544
+
Pro
CGG
-
¡û
>C231172819
CP081942
Gammaproteobacteria
Pseudomonas sp. MM211 [CP081942]
4421511
4421587
+
Pro
CGG
-
¡û
>C231236080
CP087165
Gammaproteobacteria
Pseudomonas sichuanensis B21-052 [CP087165]
1898988
1898912
-
Pro
CGG
-
¡û
>C231236362
CP087169
Gammaproteobacteria
Pseudomonas sp. B21-047 [CP087169]
1722816
1722740
-
Pro
CGG
-
¡û
>C231236675
CP087174
Gammaproteobacteria
Pseudomonas donghuensis B21-042 [CP087174]
3742838
3742914
+
Pro
CGG
-
¡û
>C231236957
CP087178
Gammaproteobacteria
Pseudomonas sp. B21-036 [CP087178]
3866152
3866228
+
Pro
CGG
-
¡û
>C231238426
CP087199
Gammaproteobacteria
Pseudomonas sp. B21-009 [CP087199]
4073431
4073507
+
Pro
CGG
-
¡û
>C231337029
CP093940
Gammaproteobacteria
Pseudomonas sp. I3-I5 [CP093940]
1469523
1469447
-
Pro
CGG
-
¡û
>C231386094
CP097528
Gammaproteobacteria
Pseudomonas putida KT2440 [CP097528]
2420713
2420637
-
Pro
CGG
-
¡û
>C231386167
CP097529
Gammaproteobacteria
Pseudomonas putida KT2440 [CP097529]
2420558
2420482
-
Pro
CGG
-
¡û
>C231429346
CP100652
Gammaproteobacteria
Pseudomonas putida HSM-C2 [CP100652]
1706618
1706542
-
Pro
CGG
-
¡û
>C231484975
CP104107
Gammaproteobacteria
Pseudomonas mosselii PH4 [CP104107]
2032638
2032562
-
Pro
CGG
-
¡û
>C231568117
CP115663
Gammaproteobacteria
Pseudomonas putida PD584_L3 [CP115663]
2379621
2379545
-
Pro
CGG
-
¡û
>C231665016
OX352324
Gammaproteobacteria
Pseudomonas sp. MM221 [OX352324]
2082913
2082837
-
Pro
CGG
-
¡û
>C241022592
CP019396
Gammaproteobacteria
Pseudomonas sp. R32 [CP019396]
3803074
3803150
+
Pro
CGG
-
¡û
>C241111908
CP046621
Gammaproteobacteria
Pseudomonas alkylphenolica Neo [CP046621]
1868995
1868919
-
Pro
CGG
-
¡û
>C241143009
CP050291
Gammaproteobacteria
Pseudomonas plecoglossicida PQLYC4 [CP050291]
3823765
3823841
+
Pro
CGG
-
¡û
>C241192242
CP097524
Gammaproteobacteria
Pseudomonas putida KT2440 [CP097524]
2420710
2420634
-
Pro
CGG
-
¡û
>C241257858
CP125214
Gammaproteobacteria
Pseudomonas juntendi Sample9_9 [CP125214]
88402
88478
+
Pro
CGG
-
¡û
>C241278806
CP127871
Gammaproteobacteria
Pseudomonas kurunegalensis ANKC.G2 [CP127871]
1897355
1897279
-
Pro
CGG
-
¡û
>C241284262
CP128543
Gammaproteobacteria
Pseudomonas soli NMI4264_15 [CP128543]
2074094
2074018
-
Pro
CGG
-
¡û
>C241284483
CP128546
Gammaproteobacteria
Pseudomonas monteilii NMI8712_11 [CP128546]
1839631
1839555
-
Pro
CGG
-
¡û
>C241284629
CP128548
Gammaproteobacteria
Pseudomonas kurunegalensis NMI3456_12 [CP128548]
1765026
1764950
-
Pro
CGG
-
¡û
>C241289401
CP129532
Gammaproteobacteria
Pseudomonas donghuensis SVBP6 [CP129532]
3838355
3838431
+
Pro
CGG
-
¡û
>C241294993
CP130566
Gammaproteobacteria
Pseudomonas fulva F8_7S_9B [CP130566]
1609995
1609919
-
Pro
CGG
-
¡û
>C241315764
CP134081
Gammaproteobacteria
Pseudomonas coleopterorum DJ13 [CP134081]
3180269
3180345
+
Pro
CGG
-
¡û
>W2310006258
ABLOMY010000012
Gammaproteobacteria
Pseudomonas putida 19MO01SA01 [ABLOMY]
141853
141929
+
Pro
CGG
[ENA]
¡û
>W1511691325
LFYQ01000020
Gammaproteobacteria
Pseudomonas putida H [LFYQ]
6244
6168
-
Pro
CGG
[ENA]
¡û
>W1511699639
LGIR01000011
Gammaproteobacteria
Pseudomonas sp. RIT-PI-a [LGIR]
130147
130071
-
Pro
CGG
[ENA]
¡û
>W11187249
CAED01000002
Gammaproteobacteria
Pseudomonas putida B001 [CAED]
58361
58285
-
Pro
CGG
[ENA]
¡û
>W121070339
AJWX01000007
Gammaproteobacteria
Pseudomonas sp. M47T1 [AJWX]
153648
153724
+
Pro
CGG
[ENA]
¡û
>W1610670810
LKBN01002760
Gammaproteobacteria
Pseudomonas putida [LKBN]
203
279
+
Pro
CGG
[ENA]
¡û
>W1610737393
LMOC01000001
Gammaproteobacteria
Pseudomonas sp. Leaf129 [LMOC]
1337339
1337415
+
Pro
CGG
[ENA]
¡û
>W1610752499
LNDO01000044
Gammaproteobacteria
Pseudomonas sp. Ga0074129 [LNDO]
18911
18835
-
Pro
CGG
[ENA]
¡û
>W1610923726
LSZO01000018
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
62234
62158
-
Pro
CGG
[ENA]
¡û
>W1710505095
FMTL01000001
Gammaproteobacteria
Pseudomonas peli [FMTL]
238186
238262
+
Pro
CGG
[ENA]
¡û
>W1710537731
FNTZ01000001
Gammaproteobacteria
Pseudomonas coleopterorum [FNTZ]
1621857
1621781
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK