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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169404 (48 seq.)
>W1710809734
LKEU01000010
Bacillota
Acetobacterium wieringae [LKEU]
47891
47815
-
Met
CAT
[ENA]
¡û
>W1711434419
MIMZ01000012
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
83179
83255
+
Met
CAT
[ENA]
¡û
>C171101771
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
1630777
1630853
+
Met
CAT
-
¡û
>WENV180176394
OAWD01000081
[OAWD] human gut metagenome; faeces
24738
24814
+
Met
CAT
[ENA]
¡û
>WENV180498290
OCAG01000047
[OCAG] human gut metagenome; faeces
41665
41741
+
Met
CAT
[ENA]
¡û
>W141150076
AXAC01000019
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
56033
56109
+
Met
CAT
[ENA]
¡û
>WENV181865729
OGWU01082626
[OGWU] human gut metagenome; faeces
350
426
+
Met
CAT
[ENA]
¡û
>WENV182403343
OIET01003096
[OIET] human gut metagenome; human gut
2215
2291
+
Met
CAT
[ENA]
¡û
>WENV182405379
OIEV01003662
[OIEV] human gut metagenome; human gut
2516
2592
+
Met
CAT
[ENA]
¡û
>WENV170692440
LGOV01007583
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
26902
26978
+
Met
CAT
[ENA]
¡û
>WENV170699880
LGVF01677748
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
32
108
+
Met
CAT
[ENA]
¡û
>C191064445
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
1902137
1902061
-
Met
CAT
-
¡û
>C191219528
LR215983
Bacillota
Eubacterium limosum [LR215983]
3151329
3151253
-
Met
CAT
-
¡û
>W1810609762
QGUD01000010
Bacillota
Eubacterium limosum 8486cho [QGUD]
70841
70765
-
Met
CAT
[ENA]
¡û
>W1810871743
QUDF01000012
Bacillota
Eubacterium sp. AM05-23 [QUDF]
83726
83802
+
Met
CAT
[ENA]
¡û
>W2010253756
CABJAI020000009
Bacillota
Eubacterium callanderi [CABJAI]
108219
108143
-
Met
CAT
[ENA]
¡û
>W2010258745
CABJDW020000012
Bacillota
Eubacterium limosum [CABJDW]
83726
83802
+
Met
CAT
[ENA]
¡û
>W2010677169
JACCKS010000019
Bacillota
Eubacterium callanderi AMC0717 [JACCKS]
58119
58043
-
Met
CAT
[ENA]
¡û
>W2012131291
VSLA01000025
Bacillota
Acetobacterium wieringae JM [VSLA]
55881
55805
-
Met
CAT
[ENA]
¡û
>W2012154789
VUMO01000016
Bacillota
Eubacteriaceae bacterium RF-744-FAT-4 [VUMO]
24434
24510
+
Met
CAT
[ENA]
¡û
>W2012154801
VUMP01000002
Bacillota
Eubacterium sp. BL-380-WT-2B [VUMP]
82746
82822
+
Met
CAT
[ENA]
¡û
>W2110074888
CABIIK010000010
Bacillota
Acetobacterium wieringae [CABIIK]
37830
37754
-
Met
CAT
[ENA]
¡û
>W2110076062
CACRTR010000007
Bacillota
Eubacterium limosum [CACRTR]
84540
84464
-
Met
CAT
[ENA]
¡û
>W2110176654
JABFAG010000005
Bacillota
Eubacterium callanderi GGCC_0197 [JABFAG]
188867
188791
-
Met
CAT
[ENA]
¡û
>W2110343405
JADMVE010000011
Bacillota
Eubacterium sp. 1001713B170207_170306_E7 [JADMVE]
51798
51874
+
Met
CAT
[ENA]
¡û
>W2110356643
JADNNR010000001
Bacillota
Eubacterium maltosivorans BSD2780120874b_170522_C8 [JADNNR]
27441
27517
+
Met
CAT
[ENA]
¡û
>W2110619593
JAHLOB010000006
Bacillota
Eubacterium callanderi N72 [JAHLOB]
81756
81832
+
Met
CAT
[ENA]
¡û
>W2110626787
JAHMUG010000002
Bacillota
Eubacterium callanderi KGMB02377 [JAHMUG]
51843
51919
+
Met
CAT
[ENA]
¡û
>C211290919
CP071444
Bacillota
Alkalibacter sp. ES005 [CP071444]
1233344
1233268
-
Met
CAT
-
¡û
>W2110725933
JAJCHU010000015
Bacillota
Eubacterium callanderi DFI.4.61 [JAJCHU]
54086
54162
+
Met
CAT
[ENA]
¡û
>W2110728137
JAJCKW010000015
Bacillota
Eubacterium callanderi DFI.4.63B [JAJCKW]
54086
54162
+
Met
CAT
[ENA]
¡û
>W2110728945
JAJCLO010000003
Bacillota
Eubacterium limosum DFI.6.107 [JAJCLO]
448
524
+
Met
CAT
[ENA]
¡û
>W2110729889
JAJCMN010000015
Bacillota
Eubacterium callanderi DFI.4.62 [JAJCMN]
54086
54162
+
Met
CAT
[ENA]
¡û
>C231248023
CP087994
Bacillota
Acetobacterium wieringae Y [CP087994]
620548
620624
+
Met
CAT
-
¡û
>C231384444
CP097376
Bacillota
Eubacterium limosum B2 [CP097376]
2041247
2041171
-
Met
CAT
-
¡û
>C231394990
CP097897
Bacillota
Acetobacterium wieringae CH1 [CP097897]
525319
525395
+
Met
CAT
-
¡û
>W2110783316
WJBE01000013
Bacillota
Acetobacterium malicum DER-2019 [WJBE]
29465
29541
+
Met
CAT
[ENA]
¡û
>W2310010264
BMAX01000002
Bacillota
[Clostridium] methoxybenzovorans ATCC 700855 [BMAX]
792700
792624
-
Met
CAT
[ENA]
¡û
>C11108832
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
3491121
3491045
-
Met
CAT
[Ensembl]
¡û
>W1511480159
JWIS01000010
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
621514
621438
-
Met
CAT
[ENA]
¡û
>W11144151
AEQN01000016
Bacillota
Pseudoramibacter alactolyticus ATCC 23263 [AEQN]
219526
219450
-
Met
CAT
[ENA]
¡û
>C121003903
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
3443481
3443405
-
Met
CAT
[Ensembl]
¡û
>C161037781
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
824896
824972
+
Met
CAT
[Ensembl]
¡û
>W1710525037
FNJF01000009
Bacillota
Eubacterium maltosivorans limosum [FNJF]
60001
60077
+
Met
CAT
[ENA]
¡û
>W1710530527
FNOU01000016
Bacillota
Eubacterium barkeri [FNOU]
39867
39943
+
Met
CAT
[ENA]
¡û
>W1710533815
FNRK01000021
Bacillota
Eubacterium aggregans [FNRK]
13904
13828
-
Met
CAT
[ENA]
¡û
>W1710571967
FOWI01000005
Bacillota
Eubacterium callanderi [FOWI]
53304
53380
+
Met
CAT
[ENA]
¡û
>W1710591267
FRBP01000001
Bacillota
Eubacterium callanderi [FRBP]
367974
367898
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK