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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169411 (23 seq.)
>W1711124501
LUKD01000010
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
36894
36970
+
Ile
GAT
[ENA]
¡û
>W1711124534
LUKE01000007
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
1888
1964
+
Ile
GAT
[ENA]
¡û
>W1711124545
LUKF01000014
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
309047
309123
+
Ile
GAT
[ENA]
¡û
>W1712010638
NELQ01000002
Bdellovibrionota
Bdellovibrio sp. SKB1291214 [NELQ]
3006024
3006100
+
Ile
GAT
[ENA]
¡û
>WENV180285486
OBID01457377
[OBID] metagenome; sludge
54
130
+
Ile
GAT
[ENA]
¢þ
>WENV180387257
OBPD01125080
[OBPD] marine metagenome; Sea Water
143
67
-
Ile
GAT
[ENA]
¢þ
>WENV181225198
OFDH01013359
[OFDH] metagenome; hydrothermal vent
79
3
-
Ile
GAT
[ENA]
¢þ
>WENV181316366
OFJU01000086
[OFJU] marine metagenome; seawater
3131
3055
-
Ile
GAT
[ENA]
¢þ
>WENV170598432
FUWD010035295
[FUWD] metagenome; unknown
384
308
-
Ile
GAT
[ENA]
¢þ
>C181047784
CP020946
Bdellovibrionota
Bdellovibrio bacteriovorus SSB218315 [CP020946]
2950631
2950555
-
Ile
GAT
-
¡û
>C151031124
CP007656
Bdellovibrionota
Bdellovibrio bacteriovorus 109J [CP007656]
1038555
1038631
+
Ile
GAT
[Ensembl]
¡û
>C151087478
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
810082
810158
+
Ile
GAT
-
¡û
>C151087483
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
1624586
1624662
+
Ile
GAT
-
¡û
>WENV067755
AACY023701890
Marine microbial communities from Global Ocean Sampling (GOS)
744
820
+
Ile
GAT
[ENA]
>C131001652
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
844037
844113
+
Ile
GAT
[Ensembl]
¡û
>C131001656
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
1839305
1839381
+
Ile
GAT
[Ensembl]
¡û
>W1610935441
LUKD01000010
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
36894
36970
+
Ile
GAT
[ENA]
¡û
>W1610935474
LUKE01000007
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
1888
1964
+
Ile
GAT
[ENA]
¡û
>W1610935485
LUKF01000014
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
309047
309123
+
Ile
GAT
[ENA]
¡û
>ENV000293
AF151298
Environmental sample from ENV division of INSDC
792
868
+
Ile
GAT
[ENA]
>ENV002072
AY933902
Environmental sample from ENV division of INSDC
112
188
+
Ile
GAT
[ENA]
>ENV002085
AY933909
Environmental sample from ENV division of INSDC
101
177
+
Ile
GAT
[ENA]
>ENV003743
DQ009440
Environmental sample from ENV division of INSDC
1551
1627
+
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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