This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169443 (66 seq.)
>W1710809816
LKEV01000005
Actinomycetota
Corynebacterium lowii [LKEV]
34567
34491
-
Leu
TAA
[ENA]
¡û
>W1710821347
LKST01000003
Actinomycetota
Corynebacterium oculi [LKST]
172106
172182
+
Leu
TAA
[ENA]
¡û
>W1710935807
LOKT01000001
Actinomycetota
Nocardia donostiensis [LOKT]
183155
183079
-
Leu
TAA
[ENA]
¡û
>W131161741
AQXZ01000009
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 [AQXZ]
110195
110271
+
Leu
TAA
[ENA]
¡û
>W1711492347
MKKI01000002
Actinomycetota
Corynebacterium sp. CNJ-954 [MKKI]
23547
23621
+
Leu
TAA
[ENA]
¡û
>W1711750392
MUMY01000001
Actinomycetota
Nocardia donostiensis [MUMY]
372765
372841
+
Leu
TAA
[ENA]
¡û
>W131059057
ANGC01000007
Actinomycetota
Rhodococcus ruber Chol-4 [ANGC]
174832
174756
-
Leu
TAA
[ENA]
¡û
>W131160879
AQXB01000007
Actinomycetota
Corynebacterium mastitidis DSM 44356 [AQXB]
59058
58982
-
Leu
TAA
[ENA]
¡û
>WENV180031980
FTJU01002310
[FTJU] metagenome; soil
11068
11142
+
Leu
TAA
[ENA]
¡û
>WENV180032415
FTJZ01127447
[FTJZ] metagenome; soil
20
94
+
Leu
TAA
[ENA]
¡û
>WENV180697395
ODDE01000216
[ODDE] human metagenome; G_DNA_Supragingival plaque
12409
12333
-
Leu
TAA
[ENA]
¡û
>WENV180717629
ODGE01000267
[ODGE] human metagenome; G_DNA_Buccal mucosa
9715
9789
+
Leu
TAA
[ENA]
¡û
>WENV180722120
ODGL01097351
[ODGL] human metagenome; G_DNA_Subgingival plaque
46
122
+
Leu
TAA
[ENA]
¡û
>WENV180733367
ODGZ01000009
[ODGZ] human metagenome; G_DNA_Supragingival plaque
117122
117046
-
Leu
TAA
[ENA]
¡û
>WENV180733587
ODGZ01000272
[ODGZ] human metagenome; G_DNA_Supragingival plaque
6657
6583
-
Leu
TAA
[ENA]
¡û
>WENV180754612
ODHU01000066
[ODHU] human metagenome; G_DNA_Supragingival plaque
22725
22649
-
Leu
TAA
[ENA]
¡û
>WENV180754756
ODHU01000696
[ODHU] human metagenome; G_DNA_Supragingival plaque
5746
5820
+
Leu
TAA
[ENA]
¡û
>WENV180776773
ODIK01131576
[ODIK] human metagenome; G_DNA_Tongue dorsum
260
186
-
Leu
TAA
[ENA]
¡û
>WENV180800770
ODJD01000963
[ODJD] human metagenome; G_DNA_Supragingival plaque
2571
2647
+
Leu
TAA
[ENA]
¡û
>WENV180801230
ODJD01015104
[ODJD] human metagenome; G_DNA_Supragingival plaque
819
745
-
Leu
TAA
[ENA]
¡û
>WENV180833724
ODKD01000145
[ODKD] human metagenome; G_DNA_Supragingival plaque
26454
26378
-
Leu
TAA
[ENA]
¡û
>WENV180833741
ODKD01000160
[ODKD] human metagenome; G_DNA_Supragingival plaque
4865
4791
-
Leu
TAA
[ENA]
¡û
>WENV180844242
ODKN01059355
[ODKN] human metagenome; G_DNA_Supragingival plaque
277
203
-
Leu
TAA
[ENA]
¡û
>WENV180844635
ODKN01268436
[ODKN] human metagenome; G_DNA_Supragingival plaque
111
187
+
Leu
TAA
[ENA]
¡û
>WENV180891503
ODMQ01000509
[ODMQ] human metagenome; G_DNA_Supragingival plaque
8698
8622
-
Leu
TAA
[ENA]
¡û
>WENV180891950
ODMQ01056678
[ODMQ] human metagenome; G_DNA_Supragingival plaque
174
100
-
Leu
TAA
[ENA]
¡û
>WENV180922041
ODTJ01001094
[ODTJ] human metagenome; G_DNA_Supragingival plaque
11989
12065
+
Leu
TAA
[ENA]
¡û
>WENV180989062
ODVL01033542
[ODVL] human metagenome; G_DNA_Tongue dorsum
563
489
-
Leu
TAA
[ENA]
¡û
>WENV181006583
ODWA01045361
[ODWA] human metagenome; G_DNA_Buccal mucosa
259
185
-
Leu
TAA
[ENA]
¡û
>WENV181018991
ODWU01000309
[ODWU] human metagenome; G_DNA_Supragingival plaque
8717
8793
+
Leu
TAA
[ENA]
¡û
>WENV181019396
ODWU01002723
[ODWU] human metagenome; G_DNA_Supragingival plaque
5745
5819
+
Leu
TAA
[ENA]
¡û
>WENV181049375
ODYD01000088
[ODYD] human metagenome; G_DNA_Supragingival plaque
12194
12270
+
Leu
TAA
[ENA]
¡û
>WENV181050118
ODYD01006814
[ODYD] human metagenome; G_DNA_Supragingival plaque
3580
3654
+
Leu
TAA
[ENA]
¡û
>WENV181069842
OEAE01000011
[OEAE] human metagenome; G_DNA_Supragingival plaque
46548
46622
+
Leu
TAA
[ENA]
¡û
>WENV181079050
OEAS01001583
[OEAS] human metagenome; G_DNA_Supragingival plaque
289
215
-
Leu
TAA
[ENA]
¡û
>WENV181079799
OEAS01015092
[OEAS] human metagenome; G_DNA_Supragingival plaque
2254
2330
+
Leu
TAA
[ENA]
¡û
>WENV181146009
OEHQ01000484
[OEHQ] human metagenome; G_DNA_Supragingival plaque
5944
6018
+
Leu
TAA
[ENA]
¡û
>WENV181146173
OEHQ01001519
[OEHQ] human metagenome; G_DNA_Supragingival plaque
756
832
+
Leu
TAA
[ENA]
¡û
>WENV170552588
CXWK01000515
[CXWK] wastewater metagenome; activated sludge
58304
58380
+
Leu
TAA
[ENA]
¡û
>W1810155037
PJAF01000006
Actinomycetota
Corynebacterium mastitidis 16-1433 [PJAF]
63663
63737
+
Leu
TAA
[ENA]
¡û
>C151013283
CP006842
Actinomycetota
Corynebacterium glyciniphilum AJ 3170 [CP006842]
1124714
1124788
+
Leu
TAA
[Ensembl]
¡û
>W2011036150
NQOE01000002
Actinomycetota
Gordonia polyisoprenivorans herm_1 [NQOE]
99049
98973
-
Leu
TAA
[ENA]
¡û
>W2011376862
RBMG01000002
Actinomycetota
Rothia sp. HSID18069 [RBMG]
147668
147594
-
Leu
TAA
[ENA]
¡û
>W2012136271
VSZK01000001
Actinomycetota
Corynebacterium urealyticum VH5913 [VSZK]
859492
859566
+
Leu
TAA
[ENA]
¡û
>W2012139225
VTFJ01000001
Actinomycetota
Corynebacterium urealyticum VH3073 [VTFJ]
945814
945740
-
Leu
TAA
[ENA]
¡û
>W2012329083
WHON01000009
Actinomycetota
Corynebacterium sp. zg331 [WHON]
26068
25992
-
Leu
TAA
[ENA]
¡û
>W2110239711
JACMYD010000009
Actinomycetota
Corynebacterium sp. zg-331 [JACMYD]
26068
25992
-
Leu
TAA
[ENA]
¡û
>W2110281167
JACWMS010000003
Actinomycetota
Gordonia hankookensis ON-33 [JACWMS]
352254
352330
+
Leu
TAA
[ENA]
¡û
>W2110334704
JADLQX010000021
Actinomycetota
Nocardia amamiensis BJ06-0157 [JADLQX]
104117
104191
+
Leu
TAA
[ENA]
¡û
>C201181149
CP046452
Actinomycetota
Corynebacterium sp. 1959 [CP046452]
1673102
1673028
-
Leu
TAA
-
¡û
>C211196317
CP064955
Actinomycetota
Corynebacterium sp. MC1420 [CP064955]
713847
713921
+
Leu
TAA
-
¡û
>C211318204
CP073075
Actinomycetota
Gordonia polyisoprenivorans C [CP073075]
3659364
3659440
+
Leu
TAA
-
¡û
>C211370741
CP079819
Actinomycetota
Rothia aeria LPB0401 [CP079819]
275834
275908
+
Leu
TAA
-
¡û
>C241200176
CP107785
Actinomycetota
Nocardia sp. NBC_00565 [CP107785]
6320330
6320256
-
Leu
TAA
-
¡û
>C241203967
CP107939
Actinomycetota
Nocardia sp. NBC_00403 [CP107939]
8460946
8460872
-
Leu
TAA
-
¡û
>W1511316266
JPVS01000002
Actinomycetota
Rothia aeria C6D [JPVS]
119024
118950
-
Leu
TAA
[ENA]
¡û
>W121062789
AJJQ01000032
Actinomycetota
Rothia aeria F0474 [AJJQ]
144862
144788
-
Leu
TAA
[ENA]
¡û
>W121126122
BAGN01000116
Actinomycetota
Nocardia vinacea NBRC 16497 [BAGN]
14572
14646
+
Leu
TAA
[ENA]
¡û
>W1610050173
BBFO01001501
Actinomycetota
Rhodococcus opacus RKJ300 = JCM 13270 [BBFO]
764
688
-
Leu
TAA
[ENA]
¡û
>W1610078567
BDAZ01000024
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
87654
87578
-
Leu
TAA
[ENA]
¡û
>W1610079832
BDBY01000008
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
9401
9325
-
Leu
TAA
[ENA]
¡û
>C131012683
CP004085
Actinomycetota
Corynebacterium urealyticum DSM 7111 [CP004085]
687613
687689
+
Leu
TAA
[Ensembl]
¡û
>W1610673871
LKEV01000005
Actinomycetota
Corynebacterium lowii [LKEV]
34567
34491
-
Leu
TAA
[ENA]
¡û
>W1610685309
LKST01000003
Actinomycetota
Corynebacterium oculi [LKST]
172106
172182
+
Leu
TAA
[ENA]
¡û
>W1710077126
BDAZ01000024
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
87654
87578
-
Leu
TAA
[ENA]
¡û
>W1710078391
BDBY01000008
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
9401
9325
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK