This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169447 (32 seq.)
>W1710785396
LJHV01000002
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
603966
603890
-
Arg
CCT
[ENA]
¡û
>W1710827189
LLEX01000066
Alphaproteobacteria
Porphyrobacter sp. HL-46 [LLEX]
3544
3468
-
Arg
CCT
[ENA]
¡û
>W1710892812
LNED01000023
Alphaproteobacteria
Sphingomonadales bacterium Ga0077531 [LNED]
149516
149592
+
Arg
CCT
[ENA]
¡û
>W131058768
ANFX01000010
Alphaproteobacteria
Porphyrobacter sp. AAP82 [ANFX]
20828
20904
+
Arg
CCT
[ENA]
¡û
>W1711075225
LSKF01000106
Alphaproteobacteria
Erythrobacteraceae bacterium CCH12-C2 [LSKF]
103902
103978
+
Arg
CCT
[ENA]
¡û
>W1711766286
MUYG01000009
Alphaproteobacteria
Erythrobacter donghaensis [MUYG]
224227
224151
-
Arg
CCT
[ENA]
¡û
>W1711766333
MUYH01000004
Alphaproteobacteria
Erythrobacter sanguineus [MUYH]
101710
101786
+
Arg
CCT
[ENA]
¡û
>WENV180020419
FTCZ01003371
[FTCZ] metagenome; soil
1589
1665
+
Arg
CCT
[ENA]
¡û
>WENV180252538
OBEQ010458605
[OBEQ] groundwater metagenome; groundwater
5647
5571
-
Arg
CCT
[ENA]
¡û
>WENV181222780
OFDC01000256
[OFDC] hot springs metagenome; Water
36789
36865
+
Arg
CCT
[ENA]
¡û
>WENV181234573
OFEU01000453
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
3602
3526
-
Arg
CCT
[ENA]
¡û
>WENV183685378
ORMF010840398
[ORMF] groundwater metagenome; groundwater
2507
2431
-
Arg
CCT
[ENA]
¡û
>WENV183694361
ORMF012223401
[ORMF] groundwater metagenome; groundwater
242
318
+
Arg
CCT
[ENA]
¡û
>WENV170003374
AGTN01317497
[AGTN] bioreactor metagenome; poplar biomass
239
163
-
Arg
CCT
[ENA]
¡û
>WENV170668370
LADL02003318
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
4497
4573
+
Arg
CCT
[ENA]
¡û
>WENV170709223
LNFM01000200
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
149516
149592
+
Arg
CCT
[ENA]
¡û
>WENV171003017
NKIC01005665
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
542
618
+
Arg
CCT
[ENA]
¡û
>C181054531
CP021912
Alphaproteobacteria
Erythrobacter sp. KY5 [CP021912]
2190047
2189971
-
Arg
CCT
-
¡û
>C191188822
CP041222
Alphaproteobacteria
Porphyrobacter sp. YT40 [CP041222]
2371819
2371895
+
Arg
CCT
-
¡û
>W141820310
JQMU01000001
Alphaproteobacteria
Porphyrobacter sp. HL-46 [JQMU]
2894230
2894154
-
Arg
CCT
[ENA]
¡û
>W1810195450
PKRO01000004
Alphaproteobacteria
Porphyrobacter sp. TH134 [PKRO]
143823
143899
+
Arg
CCT
[ENA]
¡û
>W2010722856
JACICE010000002
Alphaproteobacteria
Erythromicrobium ramosum DSM 8510 [JACICE]
625660
625736
+
Arg
CCT
[ENA]
¡û
>W2012438608
WTYB01000002
Alphaproteobacteria
Erythromicrobium ramosum JCM 10282 [WTYB]
688525
688449
-
Arg
CCT
[ENA]
¡û
>W2110570439
JAGSPB010000002
Alphaproteobacteria
Erythrobacter sp. WH131 [JAGSPB]
1150651
1150727
+
Arg
CCT
[ENA]
¡û
>C231161324
CP078091
Alphaproteobacteria
Porphyrobacter sp. ULC335 [CP078091]
2525542
2525466
-
Arg
CCT
-
¡û
>C241328131
CP136573
Alphaproteobacteria
Erythrobacter sp. [CP136573]
601567
601491
-
Arg
CCT
-
¡û
>C161093682
CP016033
Alphaproteobacteria
Erythrobacter neustonensis DSM 9434 [CP016033]
2682915
2682839
-
Arg
CCT
[Ensembl]
¡û
>W1610649202
LJHV01000002
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
603966
603890
-
Arg
CCT
[ENA]
¡û
>W1610690466
LLEX01000066
Alphaproteobacteria
Porphyrobacter sp. HL-46 [LLEX]
3544
3468
-
Arg
CCT
[ENA]
¡û
>W1610753078
LNED01000023
Alphaproteobacteria
Sphingomonadales bacterium Ga0077531 [LNED]
149516
149592
+
Arg
CCT
[ENA]
¡û
>W1610914530
LSKF01000106
Alphaproteobacteria
Erythrobacteraceae bacterium CCH12-C2 [LSKF]
103902
103978
+
Arg
CCT
[ENA]
¡û
>W1710593211
FRDF01000005
Alphaproteobacteria
Erythrobacter sanguineus [FRDF]
100859
100935
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK