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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169493 (51 seq.)
>W1710979354
LPNY01000132
Campylobacterota
Arcobacter sp. EP1 [LPNY]
126885
126809
-
Met
CAT
[ENA]
¡û
>W1710979364
LPNY01000158
Campylobacterota
Arcobacter sp. EP1 [LPNY]
249461
249385
-
Met
CAT
[ENA]
¡û
>WENV183058331
OLHP01012095
[OLHP] seawater metagenome; Sea water
495
419
-
fMet
CAT
[ENA]
¡û
>WENV183702768
PDVJ01000075
[PDVJ] alkali sediment metagenome; glacial lake sediment
22857
22933
+
fMet
CAT
[ENA]
¡û
>WENV183703256
PDVJ01006728
[PDVJ] alkali sediment metagenome; glacial lake sediment
895
819
-
fMet
CAT
[ENA]
¡û
>WENV183703352
PDVJ01010568
[PDVJ] alkali sediment metagenome; glacial lake sediment
1230
1154
-
fMet
CAT
[ENA]
¡û
>WENV183703974
PDVJ01080320
[PDVJ] alkali sediment metagenome; glacial lake sediment
109
185
+
fMet
CAT
[ENA]
¡û
>WENV170573041
FLOH01004406
[FLOH] marine metagenome; water
142
66
-
Met
CAT
[ENA]
¡û
>WENV170635412
JDSF01014718
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
124
48
-
Met
CAT
[ENA]
¡û
>WENV170704295
LLEJ01002099
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1506
1430
-
Met
CAT
[ENA]
¡û
>WENV170779360
LZQN01002695
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
823
747
-
Met
CAT
[ENA]
¡û
>C191186421
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
1556395
1556319
-
Met
CAT
-
¡û
>W1910744440
MIBO01000440
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_02_FULL_43_9 [MIBO]
12799
12875
+
Met
CAT
[ENA]
¡û
>W1910744441
MIBO01000440
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_02_FULL_43_9 [MIBO]
12925
13001
+
Met
CAT
[ENA]
¡û
>W1910744462
MIBP01000712
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8 [MIBP]
4267
4343
+
Met
CAT
[ENA]
¡û
>W1910744514
MIBS01000404
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_12_43_5 [MIBS]
916
840
-
Met
CAT
[ENA]
¡û
>W1910744545
MIBT01000101
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_12_FULL_43_24 [MIBT]
6214
6290
+
Met
CAT
[ENA]
¡û
>W1910744546
MIBT01000101
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_12_FULL_43_24 [MIBT]
6339
6415
+
Met
CAT
[ENA]
¡û
>W1911576175
PDJV01000001
Campylobacterota
Arcobacter sp. F2176 [PDJV]
200785
200709
-
Met
CAT
[ENA]
¡û
>W1911576180
PDJV01000002
Campylobacterota
Arcobacter sp. F2176 [PDJV]
256737
256661
-
Met
CAT
[ENA]
¡û
>W1911576210
PDJV01000009
Campylobacterota
Arcobacter sp. F2176 [PDJV]
62189
62265
+
Met
CAT
[ENA]
¡û
>W1911576211
PDJV01000009
Campylobacterota
Arcobacter sp. F2176 [PDJV]
66489
66565
+
Met
CAT
[ENA]
¡û
>W1911576776
PDKJ01000001
Campylobacterota
Arcobacter ebronensis CECT 8993 [PDKJ]
277228
277304
+
Met
CAT
[ENA]
¡û
>W1911576834
PDKK01000010
Campylobacterota
Arcobacter ebronensis CECT 8441 [PDKK]
12932
13008
+
Met
CAT
[ENA]
¡û
>W1911577003
PDKO01000003
Campylobacterota
Arcobacter anaerophilus DSM 24636 [PDKO]
154859
154783
-
Met
CAT
[ENA]
¡û
>W2010877872
MIBO01000440
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_02_FULL_43_9 [MIBO]
12799
12875
+
fMet
CAT
[ENA]
¡û
>W2010877873
MIBO01000440
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_02_FULL_43_9 [MIBO]
12925
13001
+
fMet
CAT
[ENA]
¡û
>W2010877894
MIBP01000712
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8 [MIBP]
4267
4343
+
fMet
CAT
[ENA]
¡û
>W2010877946
MIBS01000404
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_12_43_5 [MIBS]
916
840
-
fMet
CAT
[ENA]
¡û
>W2010877977
MIBT01000101
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_12_FULL_43_24 [MIBT]
6214
6290
+
fMet
CAT
[ENA]
¡û
>W2010877978
MIBT01000101
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_12_FULL_43_24 [MIBT]
6339
6415
+
fMet
CAT
[ENA]
¡û
>W2011185989
PDJV01000001
Campylobacterota
Arcobacter sp. F2176 [PDJV]
200785
200709
-
fMet
CAT
[ENA]
¡û
>W2011185994
PDJV01000002
Campylobacterota
Arcobacter sp. F2176 [PDJV]
256737
256661
-
fMet
CAT
[ENA]
¡û
>W2011186024
PDJV01000009
Campylobacterota
Arcobacter sp. F2176 [PDJV]
62189
62265
+
fMet
CAT
[ENA]
¡û
>W2011186025
PDJV01000009
Campylobacterota
Arcobacter sp. F2176 [PDJV]
66489
66565
+
fMet
CAT
[ENA]
¡û
>W2011186590
PDKJ01000001
Campylobacterota
Arcobacter ebronensis CECT 8993 [PDKJ]
277228
277304
+
fMet
CAT
[ENA]
¡û
>W2011186648
PDKK01000010
Campylobacterota
Arcobacter ebronensis CECT 8441 [PDKK]
12932
13008
+
fMet
CAT
[ENA]
¡û
>W2011186817
PDKO01000003
Campylobacterota
Arcobacter anaerophilus DSM 24636 [PDKO]
154859
154783
-
fMet
CAT
[ENA]
¡û
>C241161605
CP053836
Campylobacterota
Halarcobacter ebronensis LMG 27922 [CP053836]
1560129
1560053
-
fMet
CAT
-
¡û
>C10100551
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
303816
303892
+
Met
CAT
[Ensembl]
¡û
>C10100552
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
317454
317530
+
Met
CAT
[Ensembl]
¡û
>C10100560
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
2695915
2695991
+
Met
CAT
[Ensembl]
¡û
>C10100587
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
1703913
1703837
-
Met
CAT
[Ensembl]
¡û
>C11120690
CP002355
Campylobacterota
Sulfuricurvum kujiense DSM 16994 [CP002355]
1236436
1236360
-
Met
CAT
[Ensembl]
¡û
>C11120691
CP002355
Campylobacterota
Sulfuricurvum kujiense DSM 16994 [CP002355]
1236302
1236226
-
Met
CAT
[Ensembl]
¡û
>W1511517360
JXXG01000001
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
103606
103682
+
Met
CAT
[ENA]
¡û
>C161002987
CP003920
Campylobacterota
Candidatus Sulfuricurvum sp. RIFRC-1 [CP003920]
1299286
1299362
+
Met
CAT
-
¡û
>C161002988
CP003920
Campylobacterota
Candidatus Sulfuricurvum sp. RIFRC-1 [CP003920]
1299411
1299487
+
Met
CAT
-
¡û
>W1610835345
LPNY01000132
Campylobacterota
Arcobacter sp. EP1 [LPNY]
126885
126809
-
Met
CAT
[ENA]
¡û
>W1610835355
LPNY01000158
Campylobacterota
Arcobacter sp. EP1 [LPNY]
249461
249385
-
Met
CAT
[ENA]
¡û
>W1710082854
BDIR01000003
Campylobacterota
Arcobacter sp. LA11 [BDIR]
53416
53492
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK