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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169570 (34 seq.)
>W1711220318
LXQI01000008
Alphaproteobacteria
Erythrobacter sp. ANT-B3C2 [LXQI]
302606
302530
-
Ile
GAT
[ENA]
¡û
>WENV180222586
OBBD01045179
[OBBD] human gut metagenome; human gut
247
171
-
Ile
GAT
[ENA]
¡û
>WENV180297538
OBJA01042522
[OBJA] soil metagenome; sediment, water from around vicinity
749
673
-
Ile
GAT
[ENA]
¡û
>WENV181844227
OGVV01023934
[OGVV] freshwater metagenome; freshwater
477
401
-
Ile
GAT
[ENA]
¡û
>WENV181854257
OGWJ01034439
[OGWJ] freshwater metagenome; freshwater
261
337
+
Ile
GAT
[ENA]
¡û
>WENV181943706
OGYZ01030787
[OGYZ] human gut metagenome; faeces
165
241
+
Ile
GAT
[ENA]
¡û
>WENV170111987
CEGC01000373
[CEGC] microbial mat metagenome; grass silage
3418
3342
-
Ile
GAT
[ENA]
¡û
>WENV170112111
CEGD01000656
[CEGD] microbial mat metagenome; grass silage
1955
2031
+
Ile
GAT
[ENA]
¡û
>WENV170646140
JQGG01000343
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
10
84
+
Ile
GAT
[ENA]
¡û
>W1810489524
QBBV01000008
Alphaproteobacteria
Acuticoccus kandeliae J103 [QBBV]
2047
2123
+
Ile
GAT
[ENA]
¡û
>W2010574395
JAAVSS010000037
Alphaproteobacteria
Haematospirillum jordaniae H6179 [JAAVSS]
2223
2147
-
Ile
GAT
[ENA]
¡û
>W2010574444
JAAVST010000018
Alphaproteobacteria
Haematospirillum jordaniae H6172 [JAAVST]
1858
1934
+
Ile
GAT
[ENA]
¡û
>W2010574493
JAAVSU010000016
Alphaproteobacteria
Haematospirillum jordaniae H6167 [JAAVSU]
1858
1934
+
Ile
GAT
[ENA]
¡û
>W2010574542
JAAVSV010000019
Alphaproteobacteria
Haematospirillum jordaniae H5569 [JAAVSV]
1858
1934
+
Ile
GAT
[ENA]
¡û
>W2010574591
JAAVSW010000024
Alphaproteobacteria
Haematospirillum sp. H4890 [JAAVSW]
1848
1924
+
Ile
GAT
[ENA]
¡û
>W2010574640
JAAVSX010000022
Alphaproteobacteria
Haematospirillum jordaniae H4555 [JAAVSX]
1858
1934
+
Ile
GAT
[ENA]
¡û
>W2010574689
JAAVSY010000025
Alphaproteobacteria
Haematospirillum sp. H4485 [JAAVSY]
1848
1924
+
Ile
GAT
[ENA]
¡û
>W2010574707
JAAVSZ010000002
Alphaproteobacteria
Haematospirillum jordaniae H4011 [JAAVSZ]
1774
1698
-
Ile
GAT
[ENA]
¡û
>W2010574765
JAAVTA010000003
Alphaproteobacteria
Haematospirillum sp. H1815 [JAAVTA]
210276
210352
+
Ile
GAT
[ENA]
¡û
>W2010574837
JAAVTB010000017
Alphaproteobacteria
Haematospirillum jordaniae 18-209 [JAAVTB]
1858
1934
+
Ile
GAT
[ENA]
¡û
>W2010574887
JAAVTC010000015
Alphaproteobacteria
Haematospirillum jordaniae 16-489 [JAAVTC]
1759
1835
+
Ile
GAT
[ENA]
¡û
>W2010574936
JAAVTD010000019
Alphaproteobacteria
Haematospirillum jordaniae 16-449 [JAAVTD]
1741
1817
+
Ile
GAT
[ENA]
¡û
>W2010574985
JAAVTE010000017
Alphaproteobacteria
Haematospirillum jordaniae 16-385 [JAAVTE]
1858
1934
+
Ile
GAT
[ENA]
¡û
>W2010575035
JAAVTF010000023
Alphaproteobacteria
Haematospirillum sp. 15-248 [JAAVTF]
1848
1924
+
Ile
GAT
[ENA]
¡û
>W2012439465
WTYT01000011
Alphaproteobacteria
Altererythrobacter endophyticus LMG 29518 [WTYT]
2010
2086
+
Ile
GAT
[ENA]
¡û
>W2110423209
JAEKJA010000053
Alphaproteobacteria
Acuticoccus sp. 2012 [JAEKJA]
3963
3887
-
Ile
GAT
[ENA]
¡û
>W1511564761
LAEA01000131
Alphaproteobacteria
Rhodospirillaceae bacterium BRH_c57 [LAEA]
2212
2288
+
Ile
GAT
[ENA]
¡û
>C161073344
CP014525
Alphaproteobacteria
Haematospirillum jordaniae H5569 [CP014525]
775996
776072
+
Ile
GAT
[Ensembl]
¡û
>C161073348
CP014525
Alphaproteobacteria
Haematospirillum jordaniae H5569 [CP014525]
990722
990798
+
Ile
GAT
[Ensembl]
¡û
>C161073356
CP014525
Alphaproteobacteria
Haematospirillum jordaniae H5569 [CP014525]
1460954
1461030
+
Ile
GAT
[Ensembl]
¡û
>C161073390
CP014525
Alphaproteobacteria
Haematospirillum jordaniae H5569 [CP014525]
237410
237334
-
Ile
GAT
[Ensembl]
¡û
>C161073396
CP014525
Alphaproteobacteria
Haematospirillum jordaniae H5569 [CP014525]
4132
4056
-
Ile
GAT
[Ensembl]
¡û
>W1611004790
LXQI01000008
Alphaproteobacteria
Erythrobacter sp. ANT-B3C2 [LXQI]
302606
302530
-
Ile
GAT
[ENA]
¡û
>W1710598532
FTOA01000018
Alphaproteobacteria
Insolitispirillum peregrinum [FTOA]
1757
1833
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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