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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169637 (47 seq.)
>W1711705128
MSQD01000050
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
267
343
+
Ile
GAT
[ENA]
¡û
>W131051963
AMYG01000014
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
116
192
+
Ile
GAT
[ENA]
¡û
>W131167584
ARDJ01000022
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
100128
100052
-
Ile
GAT
[ENA]
¡û
>C025842
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
2154951
2154875
-
Ile
GAT
[Ensembl]
¡û
>w010198
AAKQ01000032
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
19239
19161
-
Ile
GAT
[ENA]
¡û
>W141153146
AXDC01000074
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
827
751
-
Ile
GAT
[ENA]
¡û
>W141153154
AXDC01000088
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
86
10
-
Ile
GAT
[ENA]
¡û
>W141193972
AYSN01000045
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
109
33
-
Ile
GAT
[ENA]
¡û
>W141238332
BBKT01000006
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
27842
27766
-
Ile
GAT
[ENA]
¡û
>W141246599
CANF01000016
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
98
174
+
Ile
GAT
[ENA]
¡û
>C08011036
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
440200
440276
+
Ile
GAT
[Ensembl]
¡û
>WENV170561517
CZCA01012653
[CZCA] anaerobic digester metagenome; anaerobic digester
1642
1566
-
Ile
GAT
[ENA]
¡û
>WENV170643924
JMBV01009268
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
503
579
+
Ile
GAT
[ENA]
¡û
>WENV170719138
LSQX01103453
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
12488
12412
-
Ile
GAT
[ENA]
¡û
>WENV170968187
MTKW01006919
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
613
689
+
Ile
GAT
[ENA]
¡û
>C181021904
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
1618755
1618831
+
Ile
GAT
-
¡û
>C191108120
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2743749
2743673
-
Ile
GAT
-
¡û
>W09100966
AADT03000085
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
607
683
+
Ile
GAT
[ENA]
¡û
>W09112157
ABXP01000185
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
1791
1867
+
Ile
GAT
[ENA]
¡û
>W1910747744
MINB01000069
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
186
110
-
Ile
GAT
[ENA]
¡û
>C151045314
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1943236
1943160
-
Ile
GAT
[Ensembl]
¡û
>W2010593192
JABEQB010000147
Bacillota
Caldanaerobacter subterraneus 1523vc [JABEQB]
103
27
-
Ile
GAT
[ENA]
¡û
>W2010665018
JACBNQ010000060
Bacillota
Sedimentibacter hydroxybenzoicus DSM 7310 [JACBNQ]
925
1001
+
Ile
GAT
[ENA]
¡û
>W2010879584
MINB01000069
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
186
110
-
Ile
GAT
[ENA]
¡û
>W2011622319
SLWU01000079
Bacillota
Caldanaerobacter subterraneus DSM 13054 [SLWU]
704
628
-
Ile
GAT
[ENA]
¡û
>W2012081272
VLKH01000002
Bacillota
Sedimentibacter saalensis DSM 13558 [VLKH]
511405
511329
-
Ile
GAT
[ENA]
¡û
>W2110471149
JAFCAC010000047
Bacillota
Thermoanaerobacter sp. CM-CNRG TB177 [JAFCAC]
150
226
+
Ile
GAT
[ENA]
¡û
>W2110539047
JAGGKS010000010
Bacillota
Sedimentibacter acidaminivorans DSM 24004 [JAGGKS]
2344
2420
+
Ile
GAT
[ENA]
¡û
>C201203114
CP047602
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [CP047602]
2236678
2236602
-
Ile
GAT
-
¡û
>C211129154
CP060096
Bacillota
thermophilic bacterium 3443-3Ac [CP060096]
1473248
1473172
-
Ile
GAT
-
¡û
>C231539372
CP110888
Bacillota
Thermoanaerobacter sp. RKWS2 [CP110888]
2304997
2304921
-
Ile
GAT
-
¡û
>W2110779805
VWXY01000066
Bacillota
Thermoanaerobacterium thermosaccharolyticum B2 [VWXY]
180
256
+
Ile
GAT
[ENA]
¡û
>W2110779861
VWXZ01000066
Bacillota
Thermoanaerobacterium thermosaccharolyticum A1 [VWXZ]
180
256
+
Ile
GAT
[ENA]
¡û
>W10120524
ADXD01000159
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
234
310
+
Ile
GAT
[ENA]
¡û
>C10113452
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1923136
1923060
-
Ile
GAT
[Ensembl]
¡û
>C10113821
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
450774
450850
+
Ile
GAT
[Ensembl]
¡û
>W1511275075
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
1476661
1476585
-
Ile
GAT
[ENA]
¡û
>C11122463
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
435616
435692
+
Ile
GAT
[Ensembl]
¡û
>C11122725
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
1988520
1988444
-
Ile
GAT
[Ensembl]
¡û
>C11123249
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
2273642
2273566
-
Ile
GAT
[Ensembl]
¡û
>C11123287
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
374598
374674
+
Ile
GAT
[Ensembl]
¡û
>W11127133
ADXD01000159
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
234
310
+
Ile
GAT
[ENA]
¡û
>W11150469
AEVQ01000039
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
546
622
+
Ile
GAT
[ENA]
¡û
>W11152665
AEYS01000014
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
29202
29126
-
Ile
GAT
[ENA]
¡û
>C121007616
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
1081093
1081169
+
Ile
GAT
[Ensembl]
¡û
>W121068098
AJUD01000008
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
366774
366850
+
Ile
GAT
[ENA]
¡û
>C131001908
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
405897
405973
+
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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