This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169674 (116 seq.)
>W131179452
ARMK01000040
Fusobacteriota
Fusobacterium russii ATCC 25533 [ARMK]
19845
19921
+
Pro
TGG
[ENA]
¡û
>WENV180011833
FLSK01056754
[FLSK] metagenome; saliva
196
120
-
Pro
TGG
[ENA]
¢þ
>WENV180806253
ODJH01006430
[ODJH] human metagenome; G_DNA_Tongue dorsum
1795
1871
+
Pro
TGG
[ENA]
¢þ
>WENV180931351
ODTP01003146
[ODTP] human metagenome; G_DNA_Tongue dorsum
517
593
+
Pro
TGG
[ENA]
¢þ
>WENV180979259
ODVC01000053
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
54531
54607
+
Pro
TGG
[ENA]
¢þ
>WENV180979407
ODVC01000149
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
42367
42291
-
Pro
TGG
[ENA]
¢þ
>WENV180991618
ODVO01000101
[ODVO] human metagenome; G_DNA_Buccal mucosa
11135
11059
-
Pro
TGG
[ENA]
¢þ
>WENV180991701
ODVO01000475
[ODVO] human metagenome; G_DNA_Buccal mucosa
12053
11977
-
Pro
TGG
[ENA]
¢þ
>WENV181428135
OGCU01002349
[OGCU] metagenome; Human gut stool
5075
5151
+
Pro
TGG
[ENA]
¢þ
>WENV181428137
OGCU01002434
[OGCU] metagenome; Human gut stool
5022
4946
-
Pro
TGG
[ENA]
¢þ
>WENV181432759
OGDD01044027
[OGDD] metagenome; Human gut stool
449
525
+
Pro
TGG
[ENA]
¢þ
>WENV181438644
OGDJ01001032
[OGDJ] metagenome; Human gut stool
11733
11809
+
Pro
TGG
[ENA]
¢þ
>WENV181438992
OGDL01000015
[OGDL] metagenome; Human gut stool
40057
40133
+
Pro
TGG
[ENA]
¢þ
>WENV181439082
OGDL01000213
[OGDL] metagenome; Human gut stool
5075
5151
+
Pro
TGG
[ENA]
¢þ
>WENV181446232
OGDT01000239
[OGDT] metagenome; Human gut stool
924
1000
+
Pro
TGG
[ENA]
¢þ
>WENV181454685
OGED01025029
[OGED] metagenome; Human gut stool
139
63
-
Pro
TGG
[ENA]
¢þ
>WENV181455569
OGEF01005160
[OGEF] metagenome; Human gut stool
304
228
-
Pro
TGG
[ENA]
¢þ
>WENV181460988
OGEM01000134
[OGEM] metagenome; Human gut stool
24448
24372
-
Pro
TGG
[ENA]
¢þ
>WENV181465020
OGEP01006364
[OGEP] metagenome; Human gut stool
137
61
-
Pro
TGG
[ENA]
¢þ
>WENV181471364
OGEW01001995
[OGEW] metagenome; Human gut stool
139
63
-
Pro
TGG
[ENA]
¢þ
>WENV181472077
OGEZ01000185
[OGEZ] metagenome; Human gut stool
124
48
-
Pro
TGG
[ENA]
¢þ
>WENV181475419
OGFE01000180
[OGFE] metagenome; Human gut stool
18827
18903
+
Pro
TGG
[ENA]
¢þ
>WENV181475607
OGFE01000737
[OGFE] metagenome; Human gut stool
4324
4400
+
Pro
TGG
[ENA]
¢þ
>WENV181483287
OGFK01002064
[OGFK] metagenome; Human gut stool
10335
10411
+
Pro
TGG
[ENA]
¢þ
>WENV181484176
OGFL01000722
[OGFL] metagenome; Human gut stool
24359
24283
-
Pro
TGG
[ENA]
¢þ
>WENV181484206
OGFL01000875
[OGFL] metagenome; Human gut stool
19023
19099
+
Pro
TGG
[ENA]
¢þ
>WENV181489291
OGFT01000929
[OGFT] metagenome; Human gut stool
47
123
+
Pro
TGG
[ENA]
¢þ
>WENV181510712
OGGR01002199
[OGGR] metagenome; Human gut stool
5087
5163
+
Pro
TGG
[ENA]
¢þ
>WENV181527711
OGHK01006023
[OGHK] metagenome; Human gut stool
137
61
-
Pro
TGG
[ENA]
¢þ
>WENV181533221
OGHR01000257
[OGHR] metagenome; Human gut stool
62733
62809
+
Pro
TGG
[ENA]
¢þ
>WENV181536347
OGHV01017832
[OGHV] metagenome; Human gut stool
139
63
-
Pro
TGG
[ENA]
¢þ
>WENV181550909
OGIN01000244
[OGIN] metagenome; Human gut stool
49605
49681
+
Pro
TGG
[ENA]
¢þ
>WENV181551074
OGIN01000630
[OGIN] metagenome; Human gut stool
5075
5151
+
Pro
TGG
[ENA]
¢þ
>WENV181552455
OGIO01006216
[OGIO] metagenome; Human gut stool
1138
1062
-
Pro
TGG
[ENA]
¢þ
>WENV181557235
OGIV01005247
[OGIV] metagenome; Human gut stool
67
143
+
Pro
TGG
[ENA]
¢þ
>WENV181557607
OGIV01051597
[OGIV] metagenome; Human gut stool
139
63
-
Pro
TGG
[ENA]
¢þ
>WENV181563125
OGJG01002425
[OGJG] metagenome; Human gut stool
5075
5151
+
Pro
TGG
[ENA]
¢þ
>WENV181569175
OGJK01039028
[OGJK] metagenome; Human gut stool
139
63
-
Pro
TGG
[ENA]
¢þ
>WENV181569704
OGJM01000115
[OGJM] metagenome; Human gut stool
24371
24295
-
Pro
TGG
[ENA]
¢þ
>WENV181569752
OGJM01000190
[OGJM] metagenome; Human gut stool
17626
17550
-
Pro
TGG
[ENA]
¢þ
>WENV181570204
OGJN01000106
[OGJN] metagenome; Human gut stool
66055
66131
+
Pro
TGG
[ENA]
¢þ
>WENV181580335
OGJZ01037589
[OGJZ] metagenome; Human gut stool
142
66
-
Pro
TGG
[ENA]
¢þ
>WENV181588308
OGKH01010803
[OGKH] metagenome; Human gut stool
362
438
+
Pro
TGG
[ENA]
¢þ
>WENV181588483
OGKI01002081
[OGKI] metagenome; Human gut stool
139
63
-
Pro
TGG
[ENA]
¢þ
>WENV181590355
OGKN01002220
[OGKN] metagenome; Human gut stool
139
63
-
Pro
TGG
[ENA]
¢þ
>WENV181599747
OGLC01002765
[OGLC] metagenome; Human gut stool
139
63
-
Pro
TGG
[ENA]
¢þ
>WENV181608615
OGLN01000734
[OGLN] metagenome; Human gut stool
3283
3207
-
Pro
TGG
[ENA]
¢þ
>WENV181610444
OGLQ01000205
[OGLQ] metagenome; Human gut stool
6735
6659
-
Pro
TGG
[ENA]
¢þ
>WENV181623252
OGMH01018612
[OGMH] metagenome; Human gut stool
559
635
+
Pro
TGG
[ENA]
¢þ
>WENV181623597
OGMI01002259
[OGMI] metagenome; Human gut stool
3734
3810
+
Pro
TGG
[ENA]
¢þ
>WENV181623718
OGMJ01000019
[OGMJ] metagenome; Human gut stool
122571
122647
+
Pro
TGG
[ENA]
¢þ
>WENV181632373
OGMT01008455
[OGMT] metagenome; Human gut stool
1751
1827
+
Pro
TGG
[ENA]
¢þ
>WENV181636277
OGMZ01002129
[OGMZ] metagenome; Human gut stool
139
63
-
Pro
TGG
[ENA]
¢þ
>WENV181649300
OGNS01000188
[OGNS] metagenome; Human gut stool
9623
9699
+
Pro
TGG
[ENA]
¢þ
>WENV181651966
OGNW01000224
[OGNW] metagenome; Human gut stool
33786
33862
+
Pro
TGG
[ENA]
¢þ
>WENV181652633
OGNX01003198
[OGNX] metagenome; Human gut stool
845
921
+
Pro
TGG
[ENA]
¢þ
>WENV181794563
OGRS01000954
[OGRS] human gut metagenome; faeces
6318
6394
+
Pro
TGG
[ENA]
¢þ
>WENV181820501
OGUD01000047
[OGUD] metagenome; Human gut stool
24358
24282
-
Pro
TGG
[ENA]
¢þ
>WENV181820568
OGUD01000102
[OGUD] metagenome; Human gut stool
14619
14543
-
Pro
TGG
[ENA]
¢þ
>WENV181823687
OGUJ01004369
[OGUJ] metagenome; Human gut stool
5076
5152
+
Pro
TGG
[ENA]
¢þ
>WENV181860151
OGWR01000120
[OGWR] human gut metagenome; faeces
50305
50381
+
Pro
TGG
[ENA]
¢þ
>WENV181860167
OGWR01000165
[OGWR] human gut metagenome; faeces
33459
33535
+
Pro
TGG
[ENA]
¢þ
>WENV181868088
OGWW01018585
[OGWW] human gut metagenome; faeces
139
63
-
Pro
TGG
[ENA]
¢þ
>WENV181869737
OGWY01000608
[OGWY] human gut metagenome; faeces
24594
24518
-
Pro
TGG
[ENA]
¢þ
>WENV181878406
OGXE01003073
[OGXE] human gut metagenome; faeces
88
12
-
Pro
TGG
[ENA]
¢þ
>WENV181891697
OGXO01071041
[OGXO] human gut metagenome; faeces
296
220
-
Pro
TGG
[ENA]
¢þ
>WENV181892762
OGXP01006328
[OGXP] human gut metagenome; faeces
133
57
-
Pro
TGG
[ENA]
¢þ
>WENV181899795
OGXU01038558
[OGXU] human gut metagenome; faeces
528
604
+
Pro
TGG
[ENA]
¢þ
>WENV181905453
OGXY01000245
[OGXY] human gut metagenome; faeces
31362
31438
+
Pro
TGG
[ENA]
¢þ
>WENV181931953
OGYQ01016390
[OGYQ] human gut metagenome; faeces
959
883
-
Pro
TGG
[ENA]
¢þ
>WENV181946689
OGZD01000075
[OGZD] human gut metagenome; faeces
89979
90055
+
Pro
TGG
[ENA]
¢þ
>WENV181952571
OGZI01000449
[OGZI] human gut metagenome; faeces
30588
30664
+
Pro
TGG
[ENA]
¢þ
>WENV181958836
OGZM01000623
[OGZM] human gut metagenome; faeces
29360
29284
-
Pro
TGG
[ENA]
¢þ
>WENV182015774
OHBR01026555
[OHBR] human gut metagenome; feces
598
522
-
Pro
TGG
[ENA]
¢þ
>WENV182124168
OHJQ01004341
[OHJQ] human gut metagenome; feces
1011
1087
+
Pro
TGG
[ENA]
¢þ
>WENV182496616
OITG01007390
[OITG] human gut metagenome; human gut
137
61
-
Pro
TGG
[ENA]
¢þ
>WENV182498869
OITQ01010856
[OITQ] human gut metagenome; human gut
139
63
-
Pro
TGG
[ENA]
¢þ
>WENV182503087
OIUN01003311
[OIUN] human gut metagenome; human gut
569
493
-
Pro
TGG
[ENA]
¢þ
>WENV183497852
OMGN01064527
[OMGN] human gut metagenome; feces
454
378
-
Pro
TGG
[ENA]
¢þ
>WENV183530833
OOAA01026350
[OOAA] human gut metagenome; human gut
908
832
-
Pro
TGG
[ENA]
¢þ
>WENV183544806
OOAO01030005
[OOAO] human gut metagenome; human gut
471
395
-
Pro
TGG
[ENA]
¢þ
>WENV183571639
OOCE01021580
[OOCE] human gut metagenome; human gut
1091
1015
-
Pro
TGG
[ENA]
¢þ
>WENV183576841
OOCJ01001686
[OOCJ] human gut metagenome; human gut
5165
5241
+
Pro
TGG
[ENA]
¢þ
>WENV183576964
OOCJ01003680
[OOCJ] human gut metagenome; human gut
257
333
+
Pro
TGG
[ENA]
¢þ
>WENV183578439
OOCL01000976
[OOCL] human gut metagenome; human gut
17880
17804
-
Pro
TGG
[ENA]
¢þ
>C181103991
CP024698
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1283 [CP024698]
984665
984589
-
Pro
TGG
-
¡û
>C181104127
CP024701
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1277 [CP024701]
2052508
2052432
-
Pro
TGG
-
¡û
>C181104297
CP024705
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 2653 [CP024705]
1380152
1380228
+
Pro
TGG
-
¡û
>C181160916
CP028102
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [CP028102]
632110
632186
+
Pro
TGG
-
¡û
>C181160953
CP028102
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [CP028102]
2304851
2304927
+
Pro
TGG
-
¡û
>C191219256
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
1397584
1397660
+
Pro
TGG
-
¡û
>C191219279
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
3067336
3067260
-
Pro
TGG
-
¡û
>W141560748
JHXW01000013
Fusobacteriota
Fusobacterium perfoetens ATCC 29250 [JHXW]
18947
19023
+
Pro
TGG
[ENA]
¡û
>W09118519
ACDB01000034
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [ACDB]
6872
6796
-
Pro
TGG
[ENA]
¡û
>W09118525
ACDB01000050
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [ACDB]
87479
87555
+
Pro
TGG
[ENA]
¡û
>W1910194483
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
1554480
1554404
-
Pro
TGG
[ENA]
¡û
>W1910194486
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
1088515
1088439
-
Pro
TGG
[ENA]
¡û
>W1910212524
FMJA01000003
Fusobacteriota
Fusobacterium massiliense Marseille-P2749 [FMJA]
186416
186492
+
Pro
TGG
[ENA]
¡û
>W1910212561
FMJA01000006
Fusobacteriota
Fusobacterium massiliense Marseille-P2749 [FMJA]
209171
209095
-
Pro
TGG
[ENA]
¡û
>W1810084291
PEQX01000001
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1321 [PEQX]
943528
943452
-
Pro
TGG
[ENA]
¡û
>W1810084338
PEQY01000001
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1259 [PEQY]
756155
756231
+
Pro
TGG
[ENA]
¡û
>W1810790019
QRHI01000002
Fusobacteriota
Fusobacterium mortiferum AM25-18LB [QRHI]
238466
238390
-
Pro
TGG
[ENA]
¡û
>W1810790039
QRHI01000019
Fusobacteriota
Fusobacterium mortiferum AM25-18LB [QRHI]
24354
24278
-
Pro
TGG
[ENA]
¡û
>W1810790176
QRHL01000008
Fusobacteriota
Fusobacterium mortiferum AM25-1 [QRHL]
51873
51797
-
Pro
TGG
[ENA]
¡û
>W1810790188
QRHL01000028
Fusobacteriota
Fusobacterium mortiferum AM25-1 [QRHL]
24341
24265
-
Pro
TGG
[ENA]
¡û
>W1810839551
QSTZ01000003
Fusobacteriota
Fusobacterium mortiferum OM06-15BH [QSTZ]
32904
32980
+
Pro
TGG
[ENA]
¡û
>W1810839556
QSTZ01000006
Fusobacteriota
Fusobacterium mortiferum OM06-15BH [QSTZ]
92420
92496
+
Pro
TGG
[ENA]
¡û
>W1511347885
JRJZ01000054
Fusobacteriota
Cetobacterium sp. ZWU0022 [JRJZ]
142
66
-
Pro
TGG
[ENA]
¡û
>W1511347893
JRJZ01000132
Fusobacteriota
Cetobacterium sp. ZWU0022 [JRJZ]
351
275
-
Pro
TGG
[ENA]
¡û
>W1511403689
JTLI01000049
Fusobacteriota
Cetobacterium sp. ZOR0034 [JTLI]
75
1
-
Pro
TGG
[ENA]
¡û
>W1511403690
JTLI01000053
Fusobacteriota
Cetobacterium sp. ZOR0034 [JTLI]
10279
10355
+
Pro
TGG
[ENA]
¡û
>W1511403695
JTLI01000070
Fusobacteriota
Cetobacterium sp. ZOR0034 [JTLI]
4861
4937
+
Pro
TGG
[ENA]
¡û
>W1710600941
FUWX01000006
Fusobacteriota
Cetobacterium ceti [FUWX]
178727
178803
+
Pro
TGG
[ENA]
¡û
>W1710600952
FUWX01000006
Fusobacteriota
Cetobacterium ceti [FUWX]
17659
17583
-
Pro
TGG
[ENA]
¡û
>W1710600984
FUWX01000015
Fusobacteriota
Cetobacterium ceti [FUWX]
54002
54078
+
Pro
TGG
[ENA]
¡û
>W1710601014
FUWX01000045
Fusobacteriota
Cetobacterium ceti [FUWX]
413
337
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK