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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169695 (38 seq.)
>W1711506163
MKWD01000062
Alphaproteobacteria
Rhodobacterales bacterium 65-51 [MKWD]
14803
14727
-
Pro
TGG
[ENA]
¡û
>C171067762
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
1343724
1343800
+
Pro
TGG
-
¡û
>WENV170654880
JRYL01062127
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
343
267
-
Pro
TGG
[ENA]
¡û
>WENV170692547
LGOV01013283
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
951
875
-
Pro
TGG
[ENA]
¡û
>WENV170692548
LGOV01013284
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
954
878
-
Pro
TGG
[ENA]
¡û
>WENV170695952
LGVE01191235
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1841
1917
+
Pro
TGG
[ENA]
¡û
>WENV170699392
LGVF01541758
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
181
257
+
Pro
TGG
[ENA]
¡û
>WENV170782293
MAAC01009671
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
336876
336952
+
Pro
TGG
[ENA]
¡û
>C181044813
CP020470
Alphaproteobacteria
Fuscovulum blasticum 28/5 [CP020470]
966871
966795
-
Pro
TGG
-
¡û
>W1910547069
FZNM01000004
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
195100
195176
+
Pro
TGG
[ENA]
¡û
>W1911397919
NWMQ01000012
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
76883
76807
-
Pro
TGG
[ENA]
¡û
>W1911787276
QXXQ01000001
Alphaproteobacteria
Gemmobacter sp. YJ-T1-11 [QXXQ]
582555
582479
-
Pro
TGG
[ENA]
¡û
>W1810351345
PVEP01000001
Alphaproteobacteria
Defluviimonas denitrificans DSM 18921 [PVEP]
64410
64486
+
Pro
TGG
[ENA]
¡û
>W1810444962
PZKE01000016
Alphaproteobacteria
Fuscovulum blasticum DSM 2131 [PZKE]
37865
37789
-
Pro
TGG
[ENA]
¡û
>W1810504101
QBKP01000016
Alphaproteobacteria
Gemmobacter caeni DSM 21823 [QBKP]
8439
8363
-
Pro
TGG
[ENA]
¡û
>W2010428830
FZNM01000004
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
195100
195176
+
Pro
TGG
[ENA]
¡û
>W2010493071
JAAKGP010000006
Alphaproteobacteria
Rhodobacter sp. SGA-6-6 [JAAKGP]
264254
264330
+
Pro
TGG
[ENA]
¡û
>W2010635140
JABUHN010000003
Alphaproteobacteria
Tabrizicola sp. SY72 [JABUHN]
242600
242524
-
Pro
TGG
[ENA]
¡û
>W2011338627
QXXQ01000001
Alphaproteobacteria
Gemmobacter sp. YJ-T1-11 [QXXQ]
582555
582479
-
Pro
TGG
[ENA]
¡û
>W2011691013
SSND01000001
Alphaproteobacteria
Gemmobacter sp. CC-PW-75 [SSND]
133194
133118
-
Pro
TGG
[ENA]
¡û
>W2011958323
UZWE01000040
Alphaproteobacteria
Paracoccus sp. M1-83 [UZWE]
32188
32112
-
Pro
TGG
[ENA]
¡û
>W2012071398
VKKX01000022
Alphaproteobacteria
Gemmobacter sp. N8 [VKKX]
144475
144399
-
Pro
TGG
[ENA]
¡û
>W2012082599
VLLH01000016
Alphaproteobacteria
Gemmobacter caeni CGMCC 1.7745 [VLLH]
8679
8603
-
Pro
TGG
[ENA]
¡û
>W2012375451
WMBT01000002
Alphaproteobacteria
Paracoccus sp. YIM 132242 [WMBT]
182980
182904
-
Pro
TGG
[ENA]
¡û
>W2110027093
BMIV01000002
Alphaproteobacteria
Paracoccus acridae CGMCC 1.15419 [BMIV]
236627
236703
+
Pro
TGG
[ENA]
¡û
>W2110438363
JAEPRQ010000002
Alphaproteobacteria
Paracoccus caeni MJ17 [JAEPRQ]
308878
308802
-
Pro
TGG
[ENA]
¡û
>W2110447287
JAESHT010000006
Alphaproteobacteria
Paracoccus aerius KCTC 42845 [JAESHT]
169725
169801
+
Pro
TGG
[ENA]
¡û
>W2110453630
JAESVN010000003
Alphaproteobacteria
Tabrizicola sp. DMG-N-6 [JAESVN]
230637
230561
-
Pro
TGG
[ENA]
¡û
>W2110512774
JAFLRK010000026
Alphaproteobacteria
Paracoccus sp. wg2 [JAFLRK]
26980
27056
+
Pro
TGG
[ENA]
¡û
>W2110604388
JAHHWR010000001
Alphaproteobacteria
Gemmobacter sp. con4 [JAHHWR]
372559
372483
-
Pro
TGG
[ENA]
¡û
>W2110650731
JAHVAI010000002
Alphaproteobacteria
Sinirhodobacter sp. B57 [JAHVAI]
267713
267637
-
Pro
TGG
[ENA]
¡û
>C211259186
CP069370
Alphaproteobacteria
Rhodobacter sp. N10 [CP069370]
1650687
1650611
-
Pro
TGG
-
¡û
>C211344541
CP076361
Alphaproteobacteria
Gemmobacter sp. con5 [CP076361]
879404
879328
-
Pro
TGG
-
¡û
>C231565131
CP115170
Alphaproteobacteria
Sinirhodobacter sp. HNIBRBA609 [CP115170]
1304853
1304929
+
Pro
TGG
-
¡û
>C241055271
CP041041
Alphaproteobacteria
Paracoccus sp. AK26 [CP041041]
955841
955917
+
Pro
TGG
-
¡û
>C241305675
CP132956
Alphaproteobacteria
Paracoccus sp. M09 [CP132956]
2400254
2400178
-
Pro
TGG
-
¡û
>W1610081501
BDDO01000013
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
51716
51640
-
Pro
TGG
[ENA]
¡û
>W1710080152
BDDO01000013
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
51716
51640
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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