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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169799 (34 seq.)
>W1711999763
NDXG01000004
Bacillota
Leuconostoc citreum [NDXG]
39181
39254
+
Pro
CGG
[ENA]
¡û
>WENV180299208
OBJB01002883
[OBJB] human gut metagenome; human gut
326
399
+
Pro
CGG
[ENA]
¡û
>WENV180566397
OCLI01003637
[OCLI] human gut metagenome; human gut
663
590
-
Pro
CGG
[ENA]
¡û
>C08006021
DQ489736
Bacillota
Leuconostoc citreum KM20 [DQ489736]
1640920
1640847
-
Pro
CGG
[Ensembl]
¡û
>W1910822020
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
777331
777258
-
Pro
CGG
[ENA]
¡û
>W1911283582
NTJC01000002
Bacillota
Leuconostoc citreum TR116 [NTJC]
40612
40685
+
Pro
CGG
[ENA]
¡û
>W1911631694
PUFH01000004
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
40379
40452
+
Pro
CGG
[ENA]
¡û
>W2010092890
BJJW01000008
Bacillota
Leuconostoc citreum F192-5 [BJJW]
110309
110236
-
Pro
CGG
[ENA]
¡û
>W2010092921
BJJX01000001
Bacillota
Leuconostoc citreum NRIC 1776 [BJJX]
38988
39061
+
Pro
CGG
[ENA]
¡û
>W2010099615
BJUO01000014
Bacillota
Leuconostoc citreum NBRC 102476 [BJUO]
9205
9132
-
Pro
CGG
[ENA]
¡û
>W2010678059
JACDIP010000017
Bacillota
Leuconostoc citreum BD1707 [JACDIP]
39051
39124
+
Pro
CGG
[ENA]
¡û
>W2010688381
JACGMK010000004
Bacillota
Leuconostoc citreum SG255 [JACGMK]
113760
113687
-
Pro
CGG
[ENA]
¡û
>W2010918353
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
777331
777258
-
Pro
CGG
[ENA]
¡û
>W2011074642
NTJC01000002
Bacillota
Leuconostoc citreum TR116 [NTJC]
40612
40685
+
Pro
CGG
[ENA]
¡û
>W2011183228
PDDF01000001
Bacillota
Leuconostoc citreum TMW21194 [PDDF]
40612
40685
+
Pro
CGG
[ENA]
¡û
>W2011222709
PUFH01000004
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
40379
40452
+
Pro
CGG
[ENA]
¡û
>W2011241138
QFDE01000003
Bacillota
Leuconostoc citreum G4 [QFDE]
40410
40483
+
Pro
CGG
[ENA]
¡û
>W2011241346
QFDI01000002
Bacillota
Leuconostoc citreum TR153 [QFDI]
40612
40685
+
Pro
CGG
[ENA]
¡û
>W2110299986
JADAXK010000042
Bacillota
Leuconostoc citreum DmW_137 [JADAXK]
39062
39135
+
Pro
CGG
[ENA]
¡û
>W2110581315
JAGYGO010000002
Bacillota
Leuconostoc citreum 3.8.12 [JAGYGO]
359238
359165
-
Pro
CGG
[ENA]
¡û
>C211050719
CP039736
Bacillota
Leuconostoc sp. LN180020 [CP039736]
749022
749095
+
Pro
CGG
-
¡û
>C211180918
CP063830
Bacillota
Leuconostoc citreum 37 [CP063830]
1784434
1784361
-
Pro
CGG
-
¡û
>W1510046227
CCNG01000015
Bacillota
Leuconostoc citreum [CCNG]
114634
114561
-
Pro
CGG
[ENA]
¡û
>W1510046312
CCNH01000010
Bacillota
Leuconostoc citreum [CCNH]
61126
61053
-
Pro
CGG
[ENA]
¡û
>C231469244
CP103386
Bacillota
Leuconostoc citreum PL105 [CP103386]
1640144
1640071
-
Pro
CGG
-
¡û
>C241065473
CP042393
Bacillota
Leuconostoc citreum CBA3623 [CP042393]
1427153
1427080
-
Pro
CGG
-
¡û
>C241065589
CP042410
Bacillota
Leuconostoc citreum CBA3621 [CP042410]
1864864
1864937
+
Pro
CGG
-
¡û
>C241065645
CP042413
Bacillota
Leuconostoc citreum CBA3624 [CP042413]
518421
518494
+
Pro
CGG
-
¡û
>C241065714
CP042418
Bacillota
Leuconostoc citreum CBA3627 [CP042418]
769857
769930
+
Pro
CGG
-
¡û
>C241310049
CP133560
Bacillota
Leuconostoc citreum SH12 [CP133560]
1655222
1655149
-
Pro
CGG
-
¡û
>W1511468962
JVUU01000023
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
114228
114155
-
Pro
CGG
[ENA]
¡û
>W121127427
CAGE01000001
Bacillota
Leuconostoc citreum LBAE C10 [CAGE]
113240
113167
-
Pro
CGG
[ENA]
¡û
>W121127481
CAGF01000004
Bacillota
Leuconostoc citreum LBAE C11 [CAGF]
64902
64829
-
Pro
CGG
[ENA]
¡û
>W121127523
CAGG01000001
Bacillota
Leuconostoc citreum LBAE E16 [CAGG]
225225
225152
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK