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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169927 (85 seq.)
>WENV180245094
OBDM01001970
[OBDM] human gut metagenome; human gut
915
839
-
Asp
GTC
[ENA]
¢þ
>WENV180245412
OBDM01024180
[OBDM] human gut metagenome; human gut
464
540
+
Asp
GTC
[ENA]
¢þ
>WENV180531640
OCHK01144758
[OCHK] human gut metagenome; human gut
9
85
+
Asp
GTC
[ENA]
¢þ
>WENV180620728
OCQB01277944
[OCQB] human gut metagenome; human gut
2
78
+
Asp
GTC
[ENA]
¢þ
>WENV180680902
OCVV012688831
[OCVV] gut metagenome; gut
150
226
+
Asp
GTC
[ENA]
¢þ
>WENV180680904
OCVV012688831
[OCVV] gut metagenome; gut
150
226
+
Asp
GTC
[ENA]
¢þ
>WENV180849067
ODKV01000062
[ODKV] human metagenome; G_DNA_Stool
45698
45622
-
Asp
GTC
[ENA]
¢þ
>WENV180849628
ODKV01000796
[ODKV] human metagenome; G_DNA_Stool
23204
23280
+
Asp
GTC
[ENA]
¢þ
>WENV181186792
OEMZ01039626
[OEMZ] gut metagenome; human stools
364
288
-
Asp
GTC
[ENA]
¢þ
>WENV181452030
OGDY01057081
[OGDY] metagenome; Human gut stool
769
693
-
Asp
GTC
[ENA]
¢þ
>WENV181727355
OGQA01000075
[OGQA] human gut metagenome; faeces
53086
53162
+
Asp
GTC
[ENA]
¢þ
>WENV181727458
OGQA01000240
[OGQA] human gut metagenome; faeces
9832
9756
-
Asp
GTC
[ENA]
¢þ
>WENV181766915
OGQZ01009491
[OGQZ] human gut metagenome; faeces
134
210
+
Asp
GTC
[ENA]
¢þ
>WENV181903646
OGXX01002031
[OGXX] human gut metagenome; faeces
14975
15051
+
Asp
GTC
[ENA]
¢þ
>WENV181915090
OGYF01002813
[OGYF] human gut metagenome; faeces
10961
10885
-
Asp
GTC
[ENA]
¢þ
>WENV181923745
OGYL01001664
[OGYL] human gut metagenome; faeces
10728
10804
+
Asp
GTC
[ENA]
¢þ
>WENV182030918
OHCS01000612
[OHCS] human gut metagenome; feces
10224
10300
+
Asp
GTC
[ENA]
¢þ
>WENV182031074
OHCS01002192
[OHCS] human gut metagenome; feces
5439
5363
-
Asp
GTC
[ENA]
¢þ
>WENV182081433
OHGK01000612
[OHGK] human gut metagenome; feces
8545
8621
+
Asp
GTC
[ENA]
¢þ
>WENV182105569
OHIC01005116
[OHIC] human gut metagenome; feces
2064
2140
+
Asp
GTC
[ENA]
¢þ
>WENV182125050
OHJS01000424
[OHJS] human gut metagenome; feces
16651
16727
+
Asp
GTC
[ENA]
¢þ
>WENV182143310
OHKV01000423
[OHKV] human gut metagenome; feces
16120
16196
+
Asp
GTC
[ENA]
¢þ
>WENV182149331
OHLH01000389
[OHLH] human gut metagenome; feces
12450
12374
-
Asp
GTC
[ENA]
¢þ
>WENV182172144
OHMY01000429
[OHMY] human gut metagenome; feces
16120
16196
+
Asp
GTC
[ENA]
¢þ
>WENV182193085
OHPB01000691
[OHPB] human gut metagenome; feces
11792
11716
-
Asp
GTC
[ENA]
¢þ
>WENV182197495
OHPH01004384
[OHPH] human gut metagenome; feces
264
188
-
Asp
GTC
[ENA]
¢þ
>WENV182202169
OHPO01002031
[OHPO] human gut metagenome; feces
135
59
-
Asp
GTC
[ENA]
¢þ
>WENV182212435
OHQG01000545
[OHQG] human gut metagenome; feces
8858
8782
-
Asp
GTC
[ENA]
¢þ
>WENV182212603
OHQG01002039
[OHQG] human gut metagenome; feces
5439
5363
-
Asp
GTC
[ENA]
¢þ
>WENV182215654
OHQM01000985
[OHQM] human gut metagenome; feces
2937
2861
-
Asp
GTC
[ENA]
¢þ
>WENV182215774
OHQM01002130
[OHQM] human gut metagenome; feces
1867
1943
+
Asp
GTC
[ENA]
¢þ
>WENV182219587
OHQR01003615
[OHQR] human gut metagenome; feces
2000
1924
-
Asp
GTC
[ENA]
¢þ
>WENV182220467
OHQS01000415
[OHQS] human gut metagenome; feces
16175
16251
+
Asp
GTC
[ENA]
¢þ
>WENV182255531
OHTD01000608
[OHTD] human gut metagenome; feces
14160
14084
-
Asp
GTC
[ENA]
¢þ
>WENV182266913
OHTZ01000537
[OHTZ] human gut metagenome; feces
7602
7526
-
Asp
GTC
[ENA]
¢þ
>WENV182274431
OHUK01000414
[OHUK] human gut metagenome; feces
16120
16196
+
Asp
GTC
[ENA]
¢þ
>WENV182310924
OHXP01000128
[OHXP] human gut metagenome; feces
785
709
-
Asp
GTC
[ENA]
¢þ
>WENV182325631
OHYT01000189
[OHYT] human gut metagenome; feces
555
479
-
Asp
GTC
[ENA]
¢þ
>WENV182337599
OHZX01000302
[OHZX] human gut metagenome; feces
419
495
+
Asp
GTC
[ENA]
¢þ
>WENV182347149
OIAW01000042
[OIAW] human gut metagenome; feces
1066
990
-
Asp
GTC
[ENA]
¢þ
>WENV182377771
OIDI01000027
[OIDI] human gut metagenome; feces
18580
18504
-
Asp
GTC
[ENA]
¢þ
>WENV182377969
OIDJ01000033
[OIDJ] human gut metagenome; feces
18696
18620
-
Asp
GTC
[ENA]
¢þ
>WENV182710582
OJPD01000274
[OJPD] human gut metagenome; stool sample
28578
28502
-
Asp
GTC
[ENA]
¢þ
>WENV182730493
OJPZ01000273
[OJPZ] human gut metagenome; stool sample
262
186
-
Asp
GTC
[ENA]
¢þ
>WENV182753159
OJRC01001083
[OJRC] human gut metagenome; stool sample
1453
1377
-
Asp
GTC
[ENA]
¢þ
>WENV182756402
OJRG01000548
[OJRG] human gut metagenome; stool sample
18988
19064
+
Asp
GTC
[ENA]
¢þ
>WENV182766732
OJRU01001727
[OJRU] human gut metagenome; stool sample
227
151
-
Asp
GTC
[ENA]
¢þ
>WENV182913734
OKTO01001030
[OKTO] human gut metagenome; feces
872
796
-
Asp
GTC
[ENA]
¢þ
>WENV182945364
OKVK01000041
[OKVK] human gut metagenome; human gut
95898
95974
+
Asp
GTC
[ENA]
¢þ
>WENV183037916
OLGB01000020
[OLGB] human gut metagenome; faeces
79960
80036
+
Asp
GTC
[ENA]
¢þ
>WENV183040655
OLGD01000090
[OLGD] human gut metagenome; faeces
8347
8423
+
Asp
GTC
[ENA]
¢þ
>WENV183128000
OLNZ01001619
[OLNZ] human gut metagenome; faeces
7403
7327
-
Asp
GTC
[ENA]
¢þ
>WENV183234019
OLQV01009244
[OLQV] human gut metagenome; faeces
378
454
+
Asp
GTC
[ENA]
¢þ
>WENV183296488
OLSL01075042
[OLSL] human gut metagenome; faeces
1
77
+
Asp
GTC
[ENA]
¢þ
>WENV183434218
OMBZ01000012
[OMBZ] human gut metagenome; feces
52871
52947
+
Asp
GTC
[ENA]
¢þ
>WENV183473912
OMET01000159
[OMET] human gut metagenome; feces
13640
13564
-
Asp
GTC
[ENA]
¢þ
>WENV183490935
OMGE01002248
[OMGE] human gut metagenome; feces
31
107
+
Asp
GTC
[ENA]
¢þ
>WENV170002401
AGTN01019570
[AGTN] bioreactor metagenome; poplar biomass
302
226
-
Asp
GTC
[ENA]
¢þ
>WENV170025880
CDTW01000875
[CDTW] gut metagenome; human stools
11930
12006
+
Asp
GTC
[ENA]
¢þ
>WENV170026383
CDTW01037856
[CDTW] gut metagenome; human stools
57614
57690
+
Asp
GTC
[ENA]
¢þ
>WENV170053099
CDZD01005940
[CDZD] gut metagenome; human stools
54445
54369
-
Asp
GTC
[ENA]
¢þ
>WENV170053672
CDZD01038374
[CDZD] gut metagenome; human stools
52458
52534
+
Asp
GTC
[ENA]
¢þ
>WENV170055404
CDZF01004733
[CDZF] gut metagenome; human stools
17535
17611
+
Asp
GTC
[ENA]
¢þ
>WENV170055428
CDZF01005524
[CDZF] gut metagenome; human stools
54193
54117
-
Asp
GTC
[ENA]
¢þ
>WENV170056608
CDZG01008008
[CDZG] gut metagenome; human stools
319
243
-
Asp
GTC
[ENA]
¢þ
>WENV170058332
CDZH01004677
[CDZH] gut metagenome; human stools
9976
10052
+
Asp
GTC
[ENA]
¢þ
>WENV170060256
CDZH01080606
[CDZH] gut metagenome; human stools
446
370
-
Asp
GTC
[ENA]
¢þ
>WENV170070707
CDZQ01033557
[CDZQ] gut metagenome; human stools
27126
27202
+
Asp
GTC
[ENA]
¢þ
>WENV170070748
CDZQ01035069
[CDZQ] gut metagenome; human stools
17417
17341
-
Asp
GTC
[ENA]
¢þ
>WENV170691144
LFRM01382136
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
94
170
+
Asp
GTC
[ENA]
¢þ
>C181115566
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
2689649
2689573
-
Asp
GTC
-
¡û
>C181115589
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
886405
886329
-
Asp
GTC
-
¡û
>C191031569
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
2654769
2654693
-
Asp
GTC
-
¡û
>C191031592
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
851583
851507
-
Asp
GTC
-
¡û
>C191031624
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
2780254
2780178
-
Asp
GTC
-
¡û
>C191031647
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
886405
886329
-
Asp
GTC
-
¡û
>C191072235
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
2689645
2689569
-
Asp
GTC
-
¡û
>C191072258
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
886417
886341
-
Asp
GTC
-
¡û
>W10115273
ADJQ01000002
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
74784
74860
+
Asp
GTC
[ENA]
¡û
>W10115286
ADJQ01000006
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
77538
77462
-
Asp
GTC
[ENA]
¡û
>C11108762
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
2689043
2688967
-
Asp
GTC
[Ensembl]
¡û
>C11108785
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
886404
886328
-
Asp
GTC
[Ensembl]
¡û
>W11118859
ADJQ01000002
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
74784
74860
+
Asp
GTC
[ENA]
¡û
>W11118872
ADJQ01000006
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
77538
77462
-
Asp
GTC
[ENA]
¡û
>W121009395
AGEI01000012
Bacillota
Helcococcus kunzii ATCC 51366 [AGEI]
42585
42661
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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