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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16999 (7 seq.)
>W141727742
JNFL01000391
Actinomycetota
Georgenia sp. SUBG003 [JNFL]
488
577
+
Ser
GCT
[ENA]
¡û
>W141727758
JNFL01001498
Actinomycetota
Georgenia sp. SUBG003 [JNFL]
403
314
-
Ser
GCT
[ENA]
¡û
>W1810058049
PDJD01000001
Actinomycetota
Serinibacter salmoneus DSM 21801 [PDJD]
2832319
2832230
-
Ser
GCT
[ENA]
¡û
>W1810058292
PDJI01000004
Actinomycetota
Georgenia soli DSM 21838 [PDJI]
1747023
1746934
-
Ser
GCT
[ENA]
¡û
>W2011447468
RKHK01000001
Actinomycetota
Bogoriella caseilytica DSM 11294 [RKHK]
1731363
1731452
+
Ser
GCT
[ENA]
¡û
>W2012152370
VUKC01000002
Actinomycetota
Georgenia satyanarayanai NBRC 107612 [VUKC]
452717
452806
+
Ser
GCT
[ENA]
¡û
>W2310030270
BSUM01000001
Actinomycetota
Litorihabitans aurantiacus NBRC 112290 [BSUM]
3523224
3523313
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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