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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.170033 (42 seq.)
>W131236645
AUMN01000009
Actinomycetota
Arthrobacter castelli DSM 16402 [AUMN]
124451
124377
-
Pro
GGG
[ENA]
¡û
>WENV181609570
OGLN01066224
[OGLN] metagenome; Human gut stool
637
711
+
Pro
GGG
[ENA]
¡û
>W141213332
AZRX01000030
Actinomycetota
Arthrobacter sp. H14 [AZRX]
2476
2550
+
Pro
GGG
[ENA]
¡û
>WENV170973550
MTKY01047385
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
11076
11000
-
Pro
GGG
[ENA]
¡û
>WENV170975878
MTKZ01002927
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
828
904
+
Pro
GGG
[ENA]
¡û
>C191134150
CP035037
Actinomycetota
Leucobacter muris DSM 101948 [CP035037]
515606
515680
+
Pro
GGG
-
¡û
>W1911114564
NOIQ01000006
Actinomycetota
Kocuria koreensis JCM 15915 [NOIQ]
84791
84717
-
Pro
GGG
[ENA]
¡û
>W1810058078
PDJE01000001
Actinomycetota
Microbacterium agarici DSM 21798 [PDJE]
2066793
2066867
+
Pro
GGG
[ENA]
¡û
>W1810167291
PJIJ01000002
Actinomycetota
Arthrobacter sp. ZGTC212 [PJIJ]
31502
31576
+
Pro
GGG
[ENA]
¡û
>W1810167737
PJIS01000002
Actinomycetota
Arthrobacter sp. 9E06 [PJIS]
1192521
1192446
-
Pro
GGG
[ENA]
¡û
>W1810167788
PJIT01000002
Actinomycetota
Arthrobacter sp. 9E18 [PJIT]
1192521
1192446
-
Pro
GGG
[ENA]
¡û
>W1810167839
PJIU01000002
Actinomycetota
Arthrobacter sp. 9E16 [PJIU]
1192521
1192446
-
Pro
GGG
[ENA]
¡û
>W1810167973
PJIX01000002
Actinomycetota
Arthrobacter sp. 08Y14 [PJIX]
32081
32155
+
Pro
GGG
[ENA]
¡û
>W2010726823
JACIFH010000001
Actinomycetota
Microbacterium invictum DSM 19600 [JACIFH]
1306867
1306793
-
Pro
GGG
[ENA]
¡û
>W2011009075
NOIQ01000006
Actinomycetota
Kocuria koreensis JCM 15915 [NOIQ]
84791
84717
-
Pro
GGG
[ENA]
¡û
>W2011009240
NOIU01000002
Actinomycetota
Kocuria halotolerans JCM 31975 [NOIU]
31324
31398
+
Pro
GGG
[ENA]
¡û
>W2011431327
RJAE01000012
Actinomycetota
Arthrobacter sp. LAM7117 [RJAE]
101770
101696
-
Pro
GGG
[ENA]
¡û
>W2011754056
SZWF01000031
Actinomycetota
Kocuria sp. SCSIO 13007 [SZWF]
31270
31344
+
Pro
GGG
[ENA]
¡û
>W2012020505
VFON01000001
Actinomycetota
Leucobacter komagatae DSM 8803 [VFON]
3058413
3058487
+
Pro
GGG
[ENA]
¡û
>W2012023045
VFRB01000001
Actinomycetota
Microbacterium lindanitolerans DSM 22422 [VFRB]
3061886
3061960
+
Pro
GGG
[ENA]
¡û
>W2012139468
VTFU01000001
Actinomycetota
Arthrobacter gandavensis JCM 13316 [VTFU]
1226277
1226203
-
Pro
GGG
[ENA]
¡û
>W2012406469
WOGT01000002
Actinomycetota
Kocuria koreensis JCM 15915 [WOGT]
224610
224684
+
Pro
GGG
[ENA]
¡û
>W2110130640
CAJVAP010000014
Actinomycetota
Leucobacter sp. IMT-300 [CAJVAP]
464
390
-
Pro
GGG
[ENA]
¡û
>W2110325096
JADIJA010000046
Actinomycetota
Microbacterium aquimaris JCM 15625 [JADIJA]
3676
3602
-
Pro
GGG
[ENA]
¡û
>W2110325202
JADIJD010000001
Actinomycetota
Microbacterium invictum JCM 17023 [JADIJD]
636802
636876
+
Pro
GGG
[ENA]
¡û
>W2110515692
JAFMSO010000002
Actinomycetota
Arthrobacter sp. zg-ZUI10 [JAFMSO]
11997
12071
+
Pro
GGG
[ENA]
¡û
>W2110515742
JAFMSP010000001
Actinomycetota
Arthrobacter sp. zg-ZUI122 [JAFMSP]
12026
12100
+
Pro
GGG
[ENA]
¡û
>W2110522344
JAGDYL010000023
Actinomycetota
Leucobacter ruminantium A2 [JAGDYL]
39852
39778
-
Pro
GGG
[ENA]
¡û
>W2110522354
JAGDYL010000044
Actinomycetota
Leucobacter ruminantium A2 [JAGDYL]
9360
9434
+
Pro
GGG
[ENA]
¡û
>W2110559398
JAGKQF010000002
Actinomycetota
Arthrobacter sp. zg-ZUI100 [JAGKQF]
1095745
1095671
-
Pro
GGG
[ENA]
¡û
>W2110559446
JAGKQG010000004
Actinomycetota
Arthrobacter sp. zg-ZUI227 [JAGKQG]
37634
37708
+
Pro
GGG
[ENA]
¡û
>C201019924
AP022830
Actinomycetota
Kocuria sp. TGY1120_3 [AP022830]
1849989
1849915
-
Pro
GGG
-
¡û
>C211244289
CP068173
Actinomycetota
Brevibacterium casei FDAARGOS_1100 [CP068173]
3069026
3069100
+
Pro
GGG
-
¡û
>C211341285
CP076022
Actinomycetota
Arthrobacter sp. zg-ZUI227 [CP076022]
1346901
1346975
+
Pro
GGG
-
¡û
>C211345607
CP076456
Actinomycetota
Arthrobacter sp. zg-ZUI122 [CP076456]
1513008
1513082
+
Pro
GGG
-
¡û
>C231331701
CP093326
Actinomycetota
Arthrobacter sulfonylureivorans S4-C24 [CP093326]
2618487
2618413
-
Pro
GGG
-
¡û
>C231355470
CP095043
Actinomycetota
Leucobacter sp. H25R-14 [CP095043]
1334501
1334427
-
Pro
GGG
-
¡û
>C231361240
CP095461
Actinomycetota
Arthrobacter sp. zg-Y809 [CP095461]
1393304
1393378
+
Pro
GGG
-
¡û
>W2110762082
QYAE01000002
Actinomycetota
Leucobacter aridicollis L-9 [QYAE]
150884
150958
+
Pro
GGG
[ENA]
¡û
>C231487230
CP104275
Actinomycetota
Arthrobacter sp. zg-Y815 [CP104275]
1300862
1300936
+
Pro
GGG
-
¡û
>C231554952
CP114015
Actinomycetota
Arthrobacter sp. ATA002 [CP114015]
2716859
2716785
-
Pro
GGG
-
¡û
>W1511013940
JHEI01000133
Actinomycetota
Leucobacter celer CBX151 [JHEI]
40253
40329
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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