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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.170057 (29 seq.)
>W1711135043
LUYM01000020
Actinomycetota
Actinomycetales bacterium Actino_02 [LUYM]
208223
208299
+
Val
TAC
[ENA]
¡û
>W131230037
AUHH01000002
Actinomycetota
Granulicoccus phenolivorans DSM 17626 [AUHH]
163447
163371
-
Val
TAC
[ENA]
¡û
>W1711334209
MBQD01000023
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
82271
82347
+
Val
TAC
[ENA]
¡û
>W1711717995
MTHC01000001
Actinomycetota
Tessaracoccus sp. ZS01 [MTHC]
405292
405216
-
Val
TAC
[ENA]
¡û
>C171091520
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
124
48
-
Val
TAC
-
¡û
>C171096223
CP019605
Actinomycetota
Tessaracoccus flavus RP1 [CP019605]
1162172
1162096
-
Val
TAC
-
¡û
>WENV181372951
OFQX01013747
[OFQX] wastewater metagenome; WWTP Novara (Effluent)
475
399
-
Val
TAC
[ENA]
¡û
>WENV170975621
MTKZ01001568
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1496
1420
-
Val
TAC
[ENA]
¡û
>C181229785
LT985188
Actinomycetota
Micropruina glycogenica [LT985188]
1276981
1276906
-
Val
TAC
-
¡û
>W141557421
JHVD01000005
Actinomycetota
Propionibacteriaceae bacterium P6A17 [JHVD]
17714
17790
+
Val
TAC
[ENA]
¡û
>W1911076245
NMVI01000025
Actinomycetota
Propionibacteriaceae bacterium NML 160184 [NMVI]
207135
207061
-
Val
TAC
[ENA]
¡û
>W1911076284
NMVJ01000006
Actinomycetota
Propionibacteriaceae bacterium NML 150081 [NMVJ]
77742
77667
-
Val
TAC
[ENA]
¡û
>W2010739096
JACJFY010000002
Actinomycetota
Tessaracoccus sp. MC1865 [JACJFY]
75993
76069
+
Val
TAC
[ENA]
¡û
>W2010739143
JACJFZ010000001
Actinomycetota
Tessaracoccus sp. MC1756 [JACJFZ]
1008225
1008149
-
Val
TAC
[ENA]
¡û
>W2010739200
JACJGA010000004
Actinomycetota
Tessaracoccus sp. MC1627 [JACJGA]
318234
318310
+
Val
TAC
[ENA]
¡û
>W2010739249
JACJGB010000004
Actinomycetota
Tessaracoccus sp. MC1679 [JACJGB]
232479
232403
-
Val
TAC
[ENA]
¡û
>W2011005221
NMVI01000025
Actinomycetota
Propionibacteriaceae bacterium NML 160184 [NMVI]
207135
207061
-
Val
TAC
[ENA]
¡û
>W2011005260
NMVJ01000006
Actinomycetota
Propionibacteriaceae bacterium NML 150081 [NMVJ]
77742
77667
-
Val
TAC
[ENA]
¡û
>W2011654101
SOAW01000001
Actinomycetota
Naumannella halotolerans DSM 24323 [SOAW]
1536324
1536248
-
Val
TAC
[ENA]
¡û
>W2012071235
VKKG01000001
Actinomycetota
Tessaracoccus rhinocerotis YIM 101269 [VKKG]
137868
137944
+
Val
TAC
[ENA]
¡û
>W2110325674
JADIJQ010000022
Actinomycetota
Tessaracoccus sp. SD287 [JADIJQ]
11883
11957
+
Val
TAC
[ENA]
¡û
>C211310338
CP072596
Actinomycetota
Tessaracoccus sp. MC1865 [CP072596]
1762634
1762710
+
Val
TAC
-
¡û
>C211409245
LR214441
Actinomycetota
Tessaracoccus lapidicaptus [LR214441]
124
49
-
Val
TAC
-
¡û
>C241138054
CP049865
Actinomycetota
Propioniciclava coleopterorum HDW11 [CP049865]
3032642
3032716
+
Val
TAC
-
¡û
>W1610067989
BCQZ01000001
Actinomycetota
Granulicoccus phenolivorans NBRC 107789 [BCQZ]
189737
189813
+
Val
TAC
[ENA]
¡û
>W1610946163
LUYM01000020
Actinomycetota
Actinomycetales bacterium Actino_02 [LUYM]
208223
208299
+
Val
TAC
[ENA]
¡û
>W1611066176
MBQD01000023
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
82271
82347
+
Val
TAC
[ENA]
¡û
>W1710065362
BCQZ01000001
Actinomycetota
Granulicoccus phenolivorans NBRC 107789 [BCQZ]
189737
189813
+
Val
TAC
[ENA]
¡û
>W1710531780
FNPU01000003
Actinomycetota
Tessaracoccus flavus [FNPU]
1585
1509
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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