This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.170060 (42 seq.)
>W1711120833
LUHG01000003
Bacteroidota
Hydrotalea flava [LUHG]
11466
11540
+
Pro
GGG
[ENA]
¡û
>W1711168555
LVYD01000073
Bacteroidota
Niastella vici [LVYD]
4358
4434
+
Pro
GGG
[ENA]
¡û
>W1711171911
LWBO01000003
Bacteroidota
Niastella koreensis [LWBO]
39316
39240
-
Pro
GGG
[ENA]
¡û
>W1711171969
LWBP01000196
Bacteroidota
Niastella populi [LWBP]
10421
10345
-
Pro
GGG
[ENA]
¡û
>WENV180285438
OBID01421320
[OBID] metagenome; sludge
156
230
+
Pro
GGG
[ENA]
¡û
>WENV180693725
OCZS011500780
[OCZS] soil metagenome; soil
154
80
-
Pro
GGG
[ENA]
¡û
>WENV181155370
OEID01121483
[OEID] soil metagenome; soil
128
52
-
Pro
GGG
[ENA]
¡û
>WENV181165705
OEIS01118813
[OEIS] soil metagenome; soil
66
140
+
Pro
GGG
[ENA]
¡û
>WENV181168713
OEIU01677402
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
213
139
-
Pro
GGG
[ENA]
¡û
>WENV181185869
OEMC01000740
[OEMC] metagenome; 1998
2883
2957
+
Pro
GGG
[ENA]
¡û
>WENV181308351
OFIS01006346
[OFIS] sludge metagenome; sludge
1532
1606
+
Pro
GGG
[ENA]
¡û
>WENV181312204
OFJB01055016
[OFJB] sludge metagenome; sludge
669
595
-
Pro
GGG
[ENA]
¡û
>WENV181401975
OFTY01000005
[OFTY] sludge metagenome; sludge
343897
343823
-
Pro
GGG
[ENA]
¡û
>WENV181838307
OGVM01036328
[OGVM] freshwater metagenome; freshwater
376
451
+
Pro
GGG
[ENA]
¡û
>WENV170566181
FKKE01008597
[FKKE] freshwater metagenome; freshwater
2141
2067
-
Pro
GGG
[ENA]
¡û
>WENV170576679
FRDC01001428
[FRDC] freshwater metagenome; water
67900
67824
-
Pro
GGG
[ENA]
¡û
>WENV170650517
JRYE01001990
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
9794
9868
+
Pro
GGG
[ENA]
¡û
>WENV170651882
JRYG01009957
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
457
383
-
Pro
GGG
[ENA]
¡û
>WENV170961565
MLJW01000156
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
45559
45485
-
Pro
GGG
[ENA]
¡û
>W1810686116
QKZV01000006
Bacteroidota
Hydrotalea sandarakina DSM 23241 [QKZV]
2316
2242
-
Pro
GGG
[ENA]
¡û
>W2010544205
JAARML010000010
Bacteroidota
Pseudoflavitalea sp. X16 [JAARML]
109438
109364
-
Pro
GGG
[ENA]
¡û
>W2010739282
JACJGO010000007
Bacteroidota
Flavisolibacter sp. BT320 [JACJGO]
139100
139174
+
Pro
GGG
[ENA]
¡û
>W2011368846
RBCI01000013
Bacteroidota
Flavisolibacter sp. X7X [RBCI]
70619
70545
-
Pro
GGG
[ENA]
¡û
>W2011402451
RCSU01000002
Bacteroidota
Pseudoflavitalea rhizosphaerae KACC 18655 [RCSU]
148689
148765
+
Pro
GGG
[ENA]
¡û
>W2011578063
SGXA01000001
Bacteroidota
Pseudobacter ginsenosidimutans DSM 18116 [SGXA]
2527412
2527486
+
Pro
GGG
[ENA]
¡û
>W2011616145
SJZI01000002
Bacteroidota
Flaviaesturariibacter sp. 17J68-12 [SJZI]
383542
383616
+
Pro
GGG
[ENA]
¡û
>W2011617348
SKFH01000004
Bacteroidota
Flaviaesturariibacter sp. 17J68-15 [SKFH]
8048
7974
-
Pro
GGG
[ENA]
¡û
>W2011694143
STFF01000011
Bacteroidota
Niastella sp. HX-16-21 [STFF]
175682
175756
+
Pro
GGG
[ENA]
¡û
>W2012157157
VVIP01000047
Bacteroidota
Chitinophagaceae bacterium YG09 [VVIP]
93432
93506
+
Pro
GGG
[ENA]
¡û
>W2012329654
WHPF01000002
Bacteroidota
Panacibacter sp. KCS-6 [WHPF]
236362
236288
-
Pro
GGG
[ENA]
¡û
>W2110447204
JAESDL010000005
Bacteroidota
Hydrotalea lipotrueae TMF_100 [JAESDL]
140438
140364
-
Pro
GGG
[ENA]
¡û
>W2110493985
JAFFJX010000021
Bacteroidota
Pseudoflavitalea sp. SYSU D01084 [JAFFJX]
54802
54728
-
Pro
GGG
[ENA]
¡û
>W2110503708
JAFIQX010000006
Bacteroidota
Niastella sp. SYSU D00799 [JAFIQX]
380640
380566
-
Pro
GGG
[ENA]
¡û
>C231619829
CP119311
Bacteroidota
Pseudobacter sp. [CP119311]
5129405
5129479
+
Pro
GGG
-
¡û
>C241065897
CP042431
Bacteroidota
Pseudobacter ginsenosidimutans Gsoil 221 [CP042431]
6053410
6053484
+
Pro
GGG
-
¡û
>C241065969
CP042433
Bacteroidota
Flavisolibacter ginsenosidimutans Gsoil 636 [CP042433]
726264
726338
+
Pro
GGG
-
¡û
>C121007510
CP003178
Bacteroidota
Niastella koreensis GR20-10 [CP003178]
2728852
2728928
+
Pro
GGG
[Ensembl]
¡û
>C161034866
CP011390
Bacteroidota
Flavisolibacter tropicus LCS9 [CP011390]
378063
378139
+
Pro
GGG
[Ensembl]
¡û
>W1610503568
FLNQ01000012
Bacteroidota
Hydrotalea flava [FLNQ]
15422
15348
-
Pro
GGG
[ENA]
¡û
>W1610932030
LUHG01000003
Bacteroidota
Hydrotalea flava [LUHG]
11466
11540
+
Pro
GGG
[ENA]
¡û
>WENV077328
AAFX01023758
Soil microbial communities from Minnesota Farm
545
467
-
Pro
GGG
[ENA]
>WENV077557
AAFX01060931
Soil microbial communities from Minnesota Farm
576
654
+
Pro
GGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK