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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.170104 (64 seq.)
>W1711350408
MCRK01000003
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum [MCRK]
19577
19653
+
Arg
CCT
[ENA]
¡û
>W1711350466
MCRL01000021
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum [MCRL]
89755
89831
+
Arg
CCT
[ENA]
¡û
>W1711351857
MDCT01000013
Campylobacterota
Campylobacter pinnipediorum RM18812 [MDCT]
19450
19526
+
Arg
CCT
[ENA]
¡û
>W1711351892
MDCU01000016
Campylobacterota
Campylobacter pinnipediorum RM18813 [MDCU]
20757
20681
-
Arg
CCT
[ENA]
¡û
>C171017297
CP012547
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17261 [CP012547]
298616
298540
-
Arg
CCT
-
¡û
>C171017341
CP012548
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17262 [CP012548]
293485
293409
-
Arg
CCT
-
¡û
>W131099316
AOTD01000033
Campylobacterota
Campylobacter showae CC57C [AOTD]
26104
26180
+
Arg
CCT
[ENA]
¡û
>WENV180705277
ODEJ01002509
[ODEJ] human metagenome; G_DNA_Tongue dorsum
869
793
-
Arg
CCT
[ENA]
¡û
>WENV180728395
ODGU01045443
[ODGU] human metagenome; G_DNA_Supragingival plaque
319
243
-
Arg
CCT
[ENA]
¡û
>WENV180731798
ODGW01015693
[ODGW] human metagenome; G_DNA_Supragingival plaque
667
743
+
Arg
CCT
[ENA]
¡û
>WENV180734527
ODGZ01011650
[ODGZ] human metagenome; G_DNA_Supragingival plaque
885
809
-
Arg
CCT
[ENA]
¡û
>WENV180736498
ODHB01111847
[ODHB] human metagenome; G_DNA_Supragingival plaque
42
118
+
Arg
CCT
[ENA]
¡û
>WENV180751769
ODHS01151332
[ODHS] human metagenome; G_DNA_Supragingival plaque
135
59
-
Arg
CCT
[ENA]
¡û
>WENV180765336
ODIB01095625
[ODIB] human metagenome; G_DNA_Supragingival plaque
46
122
+
Arg
CCT
[ENA]
¡û
>WENV180775786
ODIK01004372
[ODIK] human metagenome; G_DNA_Tongue dorsum
138
62
-
Arg
CCT
[ENA]
¡û
>WENV180795825
ODJB01000353
[ODJB] human metagenome; G_DNA_Supragingival plaque
15380
15456
+
Arg
CCT
[ENA]
¡û
>WENV180797783
ODJB01123157
[ODJB] human metagenome; G_DNA_Supragingival plaque
198
274
+
Arg
CCT
[ENA]
¡û
>WENV180805248
ODJG01116811
[ODJG] human metagenome; G_DNA_Supragingival plaque
164
240
+
Arg
CCT
[ENA]
¡û
>WENV180823718
ODJW01127161
[ODJW] human metagenome; G_DNA_Supragingival plaque
214
138
-
Arg
CCT
[ENA]
¡û
>WENV180824393
ODJX01005095
[ODJX] human metagenome; G_DNA_Supragingival plaque
49
125
+
Arg
CCT
[ENA]
¡û
>WENV180832899
ODKC01007338
[ODKC] human metagenome; G_DNA_Supragingival plaque
347
271
-
Arg
CCT
[ENA]
¡û
>WENV180843877
ODKN01015625
[ODKN] human metagenome; G_DNA_Supragingival plaque
100
176
+
Arg
CCT
[ENA]
¡û
>WENV180846547
ODKT01014380
[ODKT] human metagenome; G_DNA_Supragingival plaque
523
447
-
Arg
CCT
[ENA]
¡û
>WENV180860221
ODLD01031804
[ODLD] human metagenome; G_DNA_Supragingival plaque
800
876
+
Arg
CCT
[ENA]
¡û
>WENV180896930
ODNI01003713
[ODNI] human metagenome; G_DNA_Tongue dorsum
3654
3730
+
Arg
CCT
[ENA]
¡û
>WENV180901649
ODOK01001222
[ODOK] human metagenome; G_DNA_Tongue dorsum
3662
3738
+
Arg
CCT
[ENA]
¡û
>WENV180924449
ODTK01005110
[ODTK] human metagenome; G_DNA_Supragingival plaque
4890
4966
+
Arg
CCT
[ENA]
¡û
>WENV180932442
ODTP01060282
[ODTP] human metagenome; G_DNA_Tongue dorsum
9
85
+
Arg
CCT
[ENA]
¡û
>WENV180932768
ODTP01191497
[ODTP] human metagenome; G_DNA_Tongue dorsum
151
75
-
Arg
CCT
[ENA]
¡û
>WENV180939602
ODTX01056885
[ODTX] human metagenome; G_DNA_Supragingival plaque
700
776
+
Arg
CCT
[ENA]
¡û
>WENV180943538
ODUC01000902
[ODUC] human metagenome; G_DNA_Supragingival plaque
298
222
-
Arg
CCT
[ENA]
¡û
>WENV180951489
ODUH01026577
[ODUH] human metagenome; G_DNA_Subgingival plaque
734
810
+
Arg
CCT
[ENA]
¡û
>WENV180980558
ODVE01000505
[ODVE] human metagenome; G_DNA_Supragingival plaque
346
270
-
Arg
CCT
[ENA]
¡û
>WENV181008959
ODWE01020994
[ODWE] human metagenome; G_DNA_Supragingival plaque
298
222
-
Arg
CCT
[ENA]
¡û
>WENV181030237
ODXF01095485
[ODXF] human metagenome; G_DNA_Supragingival plaque
183
259
+
Arg
CCT
[ENA]
¡û
>WENV181051128
ODYD01197619
[ODYD] human metagenome; G_DNA_Supragingival plaque
149
225
+
Arg
CCT
[ENA]
¡û
>WENV181066836
ODZI01002330
[ODZI] human metagenome; G_DNA_Supragingival plaque
117
193
+
Arg
CCT
[ENA]
¡û
>WENV181077647
OEAP01098675
[OEAP] human metagenome; G_DNA_Supragingival plaque
245
169
-
Arg
CCT
[ENA]
¡û
>WENV181081461
OEAS01216375
[OEAS] human metagenome; G_DNA_Supragingival plaque
140
216
+
Arg
CCT
[ENA]
¡û
>WENV181102675
OECT01007537
[OECT] human metagenome; G_DNA_Tongue dorsum
2406
2330
-
Arg
CCT
[ENA]
¡û
>WENV181106408
OEED01156052
[OEED] human metagenome; G_DNA_Tongue dorsum
9
85
+
Arg
CCT
[ENA]
¡û
>WENV181108639
OEEJ01000123
[OEEJ] human metagenome; G_DNA_Tongue dorsum
37392
37468
+
Arg
CCT
[ENA]
¡û
>WENV181112566
OEEL01001389
[OEEL] human metagenome; G_DNA_Tongue dorsum
1203
1279
+
Arg
CCT
[ENA]
¡û
>WENV181122111
OEFL01081738
[OEFL] human metagenome; G_DNA_Supragingival plaque
379
303
-
Arg
CCT
[ENA]
¡û
>WENV181138152
OEGJ01137388
[OEGJ] human metagenome; G_DNA_Supragingival plaque
53
129
+
Arg
CCT
[ENA]
¡û
>WENV181143955
OEHM01032214
[OEHM] human metagenome; G_DNA_Supragingival plaque
241
165
-
Arg
CCT
[ENA]
¡û
>WENV181153291
OEIA01045720
[OEIA] human metagenome; G_DNA_Supragingival plaque
142
66
-
Arg
CCT
[ENA]
¡û
>WENV181156719
OEIE01073144
[OEIE] human metagenome; G_DNA_Supragingival plaque
376
300
-
Arg
CCT
[ENA]
¡û
>WENV181180191
OEJT01116591
[OEJT] human metagenome; G_DNA_Supragingival plaque
291
215
-
Arg
CCT
[ENA]
¡û
>WENV181182358
OEJV01006916
[OEJV] human metagenome; G_DNA_Supragingival plaque
184
108
-
Arg
CCT
[ENA]
¡û
>C191220134
LR535679
Campylobacterota
Campylobacter showae [LR535679]
684636
684560
-
Arg
CCT
-
¡û
>W09122007
ACFU01000003
Campylobacterota
Campylobacter rectus RM3267 [ACFU]
120344
120420
+
Arg
CCT
[ENA]
¡û
>W2010752206
JACLZK010000001
Campylobacterota
Campylobacter sp. Marseille-Q3452 [JACLZK]
537193
537117
-
Arg
CCT
[ENA]
¡û
>W2011483816
RQYP01000003
Campylobacterota
Campylobacter rectus OH2158 [RQYP]
79573
79649
+
Arg
CCT
[ENA]
¡û
>W2011950560
UWOI01000001
Campylobacterota
Campylobacter showae [UWOI]
125442
125518
+
Arg
CCT
[ENA]
¡û
>W2011950615
UWOJ01000001
Campylobacterota
Campylobacter showae [UWOJ]
675892
675968
+
Arg
CCT
[ENA]
¡û
>W2110211283
JACGAS010000010
Campylobacterota
Campylobacter sp. RM12647 [JACGAS]
8548
8472
-
Arg
CCT
[ENA]
¡û
>W2110211459
JACGAX010000008
Campylobacterota
Campylobacter sp. RM9334 [JACGAX]
52436
52512
+
Arg
CCT
[ENA]
¡û
>W2110211529
JACGAZ010000010
Campylobacterota
Campylobacter sp. RM9332 [JACGAZ]
8541
8465
-
Arg
CCT
[ENA]
¡û
>W2110593758
JAHCZC010000001
Campylobacterota
Campylobacter sp. 2018MI13 [JAHCZC]
53240
53316
+
Arg
CCT
[ENA]
¡û
>W2110593820
JAHCZD010000007
Campylobacterota
Campylobacter sp. 2018MI10 [JAHCZD]
79201
79277
+
Arg
CCT
[ENA]
¡û
>C211025974
AP024713
Campylobacterota
Campylobacter sp. 19-13652 [AP024713]
1334282
1334206
-
Arg
CCT
-
¡û
>C231219191
CP085962
Campylobacterota
Campylobacter rectus FDAARGOS_1549 [CP085962]
391785
391709
-
Arg
CCT
-
¡û
>C241016671
CP012543
Campylobacterota
Campylobacter rectus ATCC 33238 [CP012543]
1900256
1900180
-
Arg
CCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK