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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.170105 (15 seq.)
>W141144148
AWTA01000162
Bacillota
Clostridium sp. ATCC 29733 [AWTA]
6616
6540
-
Val
CAC
[ENA]
¡û
>W1911533165
OKQO01000003
Bacillota
Neobitarella massiliensis Marseille-P4047 [OKQO]
209600
209676
+
Val
CAC
[ENA]
¡û
>W2010270266
CABKSQ020000077
Bacillota
Clostridiaceae bacterium [CABKSQ]
58676
58600
-
Val
CAC
[ENA]
¡û
>W2010291062
CABMOS010000001
Bacillota
Ruminococcaceae bacterium [CABMOS]
318958
319034
+
Val
CAC
[ENA]
¡û
>W2010752353
JACMSD010000002
Bacillota
Bittarella massiliensis NSJ-19 [JACMSD]
366054
365978
-
Val
CAC
[ENA]
¡û
>W2011165852
OKQO01000003
Bacillota
Neobitarella massiliensis Marseille-P4047 [OKQO]
209600
209676
+
Val
CAC
[ENA]
¡û
>W2012487922
WWVX01000004
Bacillota
Bittarella massiliensis BIOML-A2 [WWVX]
178558
178482
-
Val
CAC
[ENA]
¡û
>W2012487967
WWVY01000005
Bacillota
Bittarella massiliensis BIOML-A1 [WWVY]
135956
135880
-
Val
CAC
[ENA]
¡û
>W2110177586
JABFCL010000020
Bacillota
Bittarella massiliensis GGCC_0305 [JABFCL]
8036
7960
-
Val
CAC
[ENA]
¡û
>W2110242393
JACOGI010000001
Bacillota
Neobittarella massiliensis NSJ-65 [JACOGI]
1271716
1271640
-
Val
CAC
[ENA]
¡û
>W2110243763
JACONZ010000001
Bacillota
Anaerofilum sp. BX8 [JACONZ]
943164
943240
+
Val
CAC
[ENA]
¡û
>W2110621281
JAHLPK010000003
Bacillota
Acetanaerobacterium sp. MSJ-12 [JAHLPK]
83060
83136
+
Val
CAC
[ENA]
¡û
>W1610163697
FAUJ01000015
Bacillota
Bittarella massiliensis (ex Durand et al. 2017) GD6 [FAUJ]
195512
195588
+
Val
CAC
[ENA]
¡û
>W1710165364
FAUJ01000015
Bacillota
Bittarella massiliensis (ex Durand et al. 2017) GD6 [FAUJ]
195512
195588
+
Val
CAC
[ENA]
¡û
>W1710584927
FQVY01000001
Bacillota
Bittarella massiliensis (ex Durand et al. 2017) DSM 4029 [FQVY]
715684
715608
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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