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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.170245 (56 seq.)
>WENV180195209
OAZY01003096
[OAZY] human gut metagenome; faeces
2024
1951
-
Met
CAT
[ENA]
¢þ
>WENV181195103
OEQS01002275
[OEQS] metagenome; Caecal content
2377
2303
-
Met
CAT
[ENA]
¢þ
>WENV181196104
OEQW01001115
[OEQW] metagenome; Caecal content
3101
3027
-
Met
CAT
[ENA]
¢þ
>WENV181196604
OEQY01000540
[OEQY] metagenome; Caecal content
109
184
+
Met
CAT
[ENA]
¢þ
>WENV181199156
OERG01001993
[OERG] metagenome; Caecal content
2300
2375
+
Met
CAT
[ENA]
¢þ
>WENV181202489
OERR01011730
[OERR] metagenome; Caecal content
530
455
-
Met
CAT
[ENA]
¢þ
>WENV181204994
OESA01000590
[OESA] metagenome; Caecal content
8019
7944
-
Met
CAT
[ENA]
¢þ
>WENV181304295
OFHW01021257
[OFHW] metagenome; Caecal content
77
152
+
Met
CAT
[ENA]
¢þ
>WENV181516638
OGGZ01000163
[OGGZ] metagenome; Human gut stool
18743
18817
+
Met
CAT
[ENA]
¢þ
>WENV182042405
OHDN01003985
[OHDN] human gut metagenome; feces
838
912
+
Met
CAT
[ENA]
¢þ
>WENV182060678
OHES01018709
[OHES] human gut metagenome; feces
911
837
-
Met
CAT
[ENA]
¢þ
>WENV182200888
OHPL01008436
[OHPL] human gut metagenome; feces
39
113
+
Met
CAT
[ENA]
¢þ
>WENV182212004
OHQF01012773
[OHQF] human gut metagenome; feces
843
917
+
Met
CAT
[ENA]
¢þ
>WENV182537108
OIXH01003430
[OIXH] human gut metagenome; faeces
5244
5318
+
Met
CAT
[ENA]
¢þ
>WENV182613821
OJKA01017416
[OJKA] metagenome; faeces
748
673
-
Met
CAT
[ENA]
¢þ
>WENV182957842
OKWH01000023
[OKWH] human gut metagenome; human gut
41303
41229
-
Met
CAT
[ENA]
¢þ
>WENV182963700
OKWR01000008
[OKWR] human gut metagenome; human gut
261474
261400
-
Met
CAT
[ENA]
¢þ
>WENV183255818
OLRK01001493
[OLRK] human gut metagenome; faeces
14841
14915
+
Met
CAT
[ENA]
¢þ
>WENV183330327
OLWB01005551
[OLWB] human gut metagenome; faeces
6292
6218
-
Met
CAT
[ENA]
¢þ
>WENV183381202
OLYJ01000917
[OLYJ] human gut metagenome; feces
9100
9026
-
Met
CAT
[ENA]
¢þ
>WENV183412767
OMAM01012073
[OMAM] human gut metagenome; feces
72
146
+
Met
CAT
[ENA]
¢þ
>WENV183414046
OMAO01001557
[OMAO] human gut metagenome; feces
7209
7135
-
Met
CAT
[ENA]
¢þ
>WENV183444147
OMCO01000232
[OMCO] human gut metagenome; feces
15863
15937
+
Met
CAT
[ENA]
¢þ
>WENV183589599
OOCW01001845
[OOCW] human gut metagenome; human gut
13442
13368
-
Met
CAT
[ENA]
¢þ
>WENV183589990
OOCW01031433
[OOCW] human gut metagenome; human gut
131
55
-
Met
CAT
[ENA]
¢þ
>WENV183651536
OQVU01000731
[OQVU] human gut metagenome; human gut
7484
7558
+
Met
CAT
[ENA]
¢þ
>C191128933
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
4518325
4518251
-
Met
CAT
-
¡û
>C191128952
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
3960459
3960385
-
Met
CAT
-
¡û
>C191128957
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
3959367
3959292
-
Met
CAT
-
¡û
>W1910217683
FMMP01000014
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
28113
28189
+
Met
CAT
[ENA]
¡û
>W1910217706
FMMP01000020
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
943
1017
+
Met
CAT
[ENA]
¡û
>W1910217711
FMMP01000020
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
2135
2210
+
Met
CAT
[ENA]
¡û
>W1911116950
NOKA02000020
Bacillota
Lachnotalea glycerini CCRI-19302 [NOKA]
53883
53809
-
Met
CAT
[ENA]
¡û
>W1810071130
PEDL01000041
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
10031
9956
-
Met
CAT
[ENA]
¡û
>W1810628737
QICS01000004
Bacillota
Lachnotalea glycerini DSM 28816 [QICS]
102075
102149
+
Met
CAT
[ENA]
¡û
>W10118854
ADVF01000001
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
17945
17869
-
Met
CAT
[ENA]
¡û
>W10118935
ADVF01000064
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
10047
9974
-
Met
CAT
[ENA]
¡û
>C11105579
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3714787
3714711
-
Met
CAT
[Ensembl]
¡û
>C11105598
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3253748
3253672
-
Met
CAT
[Ensembl]
¡û
>C11105603
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3252655
3252582
-
Met
CAT
[Ensembl]
¡û
>W11125026
ADVF01000001
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
17945
17869
-
Met
CAT
[ENA]
¡û
>W11125107
ADVF01000064
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
10047
9974
-
Met
CAT
[ENA]
¡û
>W1610046313
BBCG01000021
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
45522
45446
-
Met
CAT
[ENA]
¡û
>W1610046356
BBCG01000130
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
166
242
+
Met
CAT
[ENA]
¡û
>W1610046361
BBCG01000130
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
1229
1305
+
Met
CAT
[ENA]
¡û
>W1610205836
FCNS01000005
Bacillota
Clostridiales bacterium CHKCI001 [FCNS]
47062
47136
+
Met
CAT
[ENA]
¡û
>W1610205855
FCNS01000014
Bacillota
Clostridiales bacterium CHKCI001 [FCNS]
206
280
+
Met
CAT
[ENA]
¡û
>W1710043109
BBCG01000021
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
45522
45446
-
Met
CAT
[ENA]
¡û
>W1710043152
BBCG01000130
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
166
242
+
Met
CAT
[ENA]
¡û
>W1710043157
BBCG01000130
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
1229
1305
+
Met
CAT
[ENA]
¡û
>W1710504722
FMKA01000008
Bacillota
Anaerobium acetethylicum [FMKA]
306
382
+
Met
CAT
[ENA]
¡û
>W1710504761
FMKA01000047
Bacillota
Anaerobium acetethylicum [FMKA]
7006
7082
+
Met
CAT
[ENA]
¡û
>W1710553339
FOHN01000002
Bacillota
[Clostridium] polysaccharolyticum [FOHN]
57161
57087
-
Met
CAT
[ENA]
¡û
>W1710553357
FOHN01000019
Bacillota
[Clostridium] polysaccharolyticum [FOHN]
53157
53083
-
Met
CAT
[ENA]
¡û
>W1710575199
FOYZ01000001
Bacillota
Anaeromicropila populeti [FOYZ]
51674
51600
-
Met
CAT
[ENA]
¡û
>W1710575207
FOYZ01000004
Bacillota
Anaeromicropila populeti [FOYZ]
96389
96462
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK