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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.17035 (135 seq.)
>W1711457605
MJBR01000025
Bacteroidota
Salegentibacter salarius [MJBR]
15672
15582
-
Ser
GGA
[ENA]
¡û
>W131204923
ATCI01000008
Bacteroidota
Capnocytophaga sp. oral taxon 336 oral taxon 336 str. F0502 [ATCI]
135184
135272
+
Ser
GGA
[ENA]
¡û
>WENV180226013
OBBP01020214
[OBBP] human oral metagenome; human oral
387
475
+
Ser
GGA
[ENA]
¢þ
>W141042718
AMES01000161
Bacteroidota
Capnocytophaga sp. oral taxon 380 oral taxon 380 str. F0488 [AMES]
5532
5444
-
Ser
GGA
[ENA]
¡û
>W141042783
AMEU01000154
Bacteroidota
Capnocytophaga sp. oral taxon 326 oral taxon 326 str. F0382 [AMEU]
12024
12112
+
Ser
GGA
[ENA]
¡û
>W141042810
AMEV01000088
Bacteroidota
Capnocytophaga sp. oral taxon 324 oral taxon 324 str. F0483 [AMEV]
19460
19372
-
Ser
GGA
[ENA]
¡û
>WENV180697816
ODDE01005727
[ODDE] human metagenome; G_DNA_Supragingival plaque
112
200
+
Ser
GGA
[ENA]
¢þ
>WENV180718552
ODGG01012720
[ODGG] human metagenome; G_DNA_Buccal mucosa
124
36
-
Ser
GGA
[ENA]
¢þ
>WENV180720142
ODGJ01018723
[ODGJ] human metagenome; G_DNA_Tongue dorsum
1287
1199
-
Ser
GGA
[ENA]
¢þ
>WENV180729098
ODGU01195646
[ODGU] human metagenome; G_DNA_Supragingival plaque
112
200
+
Ser
GGA
[ENA]
¢þ
>WENV180732410
ODGY01000375
[ODGY] human metagenome; G_DNA_Supragingival plaque
7190
7102
-
Ser
GGA
[ENA]
¢þ
>WENV180733538
ODGZ01000193
[ODGZ] human metagenome; G_DNA_Supragingival plaque
14419
14331
-
Ser
GGA
[ENA]
¢þ
>WENV180733767
ODGZ01000747
[ODGZ] human metagenome; G_DNA_Supragingival plaque
7698
7610
-
Ser
GGA
[ENA]
¢þ
>WENV180736036
ODHB01003480
[ODHB] human metagenome; G_DNA_Supragingival plaque
3251
3339
+
Ser
GGA
[ENA]
¢þ
>WENV180738575
ODHD01000113
[ODHD] human metagenome; G_DNA_Supragingival plaque
53852
53764
-
Ser
GGA
[ENA]
¢þ
>WENV180751154
ODHS01023431
[ODHS] human metagenome; G_DNA_Supragingival plaque
1537
1449
-
Ser
GGA
[ENA]
¢þ
>WENV180754791
ODHU01000914
[ODHU] human metagenome; G_DNA_Supragingival plaque
5116
5204
+
Ser
GGA
[ENA]
¢þ
>WENV180765119
ODIB01021527
[ODIB] human metagenome; G_DNA_Supragingival plaque
297
209
-
Ser
GGA
[ENA]
¢þ
>WENV180767645
ODIG01000306
[ODIG] human metagenome; G_DNA_Tongue dorsum
22939
23027
+
Ser
GGA
[ENA]
¢þ
>WENV180775018
ODIJ01168383
[ODIJ] human metagenome; G_DNA_Tongue dorsum
95
7
-
Ser
GGA
[ENA]
¢þ
>WENV180777640
ODIL01037019
[ODIL] human metagenome; G_DNA_Supragingival plaque
253
341
+
Ser
GGA
[ENA]
¢þ
>WENV180777836
ODIM01000003
[ODIM] human metagenome; G_DNA_Supragingival plaque
157714
157802
+
Ser
GGA
[ENA]
¢þ
>WENV180781750
ODIP01003055
[ODIP] human metagenome; G_DNA_Supragingival plaque
3335
3423
+
Ser
GGA
[ENA]
¢þ
>WENV180784064
ODIQ01111579
[ODIQ] human metagenome; G_DNA_Tongue dorsum
158
246
+
Ser
GGA
[ENA]
¢þ
>WENV180787243
ODIS01002530
[ODIS] human metagenome; G_DNA_Supragingival plaque
7795
7707
-
Ser
GGA
[ENA]
¢þ
>WENV180796112
ODJB01001383
[ODJB] human metagenome; G_DNA_Supragingival plaque
8993
9081
+
Ser
GGA
[ENA]
¢þ
>WENV180796145
ODJB01001590
[ODJB] human metagenome; G_DNA_Supragingival plaque
8993
8905
-
Ser
GGA
[ENA]
¢þ
>WENV180800643
ODJD01000349
[ODJD] human metagenome; G_DNA_Supragingival plaque
5103
5191
+
Ser
GGA
[ENA]
¢þ
>WENV180803859
ODJG01000117
[ODJG] human metagenome; G_DNA_Supragingival plaque
39889
39801
-
Ser
GGA
[ENA]
¢þ
>WENV180806878
ODJI01000090
[ODJI] human metagenome; G_DNA_Tongue dorsum
56568
56480
-
Ser
GGA
[ENA]
¢þ
>WENV180808723
ODJK01000716
[ODJK] human metagenome; G_DNA_Subgingival plaque
10269
10357
+
Ser
GGA
[ENA]
¢þ
>WENV180813349
ODJO01000398
[ODJO] human metagenome; G_DNA_Supragingival plaque
17344
17256
-
Ser
GGA
[ENA]
¢þ
>WENV180813362
ODJO01000464
[ODJO] human metagenome; G_DNA_Supragingival plaque
15042
14954
-
Ser
GGA
[ENA]
¢þ
>WENV180822454
ODJT01001184
[ODJT] human metagenome; G_DNA_Supragingival plaque
2478
2390
-
Ser
GGA
[ENA]
¢þ
>WENV180822910
ODJW01000579
[ODJW] human metagenome; G_DNA_Supragingival plaque
3230
3318
+
Ser
GGA
[ENA]
¢þ
>WENV180823941
ODJX01000021
[ODJX] human metagenome; G_DNA_Supragingival plaque
57209
57121
-
Ser
GGA
[ENA]
¢þ
>WENV180832208
ODKC01000728
[ODKC] human metagenome; G_DNA_Supragingival plaque
5448
5360
-
Ser
GGA
[ENA]
¢þ
>WENV180832211
ODKC01000739
[ODKC] human metagenome; G_DNA_Supragingival plaque
25120
25032
-
Ser
GGA
[ENA]
¢þ
>WENV180834158
ODKD01004769
[ODKD] human metagenome; G_DNA_Supragingival plaque
217
129
-
Ser
GGA
[ENA]
¢þ
>WENV180835114
ODKE01000679
[ODKE] human metagenome; G_DNA_Supragingival plaque
3273
3361
+
Ser
GGA
[ENA]
¢þ
>WENV180841847
ODKK01014831
[ODKK] human metagenome; G_DNA_Buccal mucosa
319
231
-
Ser
GGA
[ENA]
¢þ
>WENV180843178
ODKN01000786
[ODKN] human metagenome; G_DNA_Supragingival plaque
14238
14150
-
Ser
GGA
[ENA]
¢þ
>WENV180846524
ODKT01013595
[ODKT] human metagenome; G_DNA_Supragingival plaque
203
115
-
Ser
GGA
[ENA]
¢þ
>WENV180852233
ODKW01000146
[ODKW] human metagenome; G_DNA_Tongue dorsum
17351
17263
-
Ser
GGA
[ENA]
¢þ
>WENV180860509
ODLD01123053
[ODLD] human metagenome; G_DNA_Supragingival plaque
68
156
+
Ser
GGA
[ENA]
¢þ
>WENV180860789
ODLE01000108
[ODLE] human metagenome; G_DNA_Tongue dorsum
23686
23774
+
Ser
GGA
[ENA]
¢þ
>WENV180888462
ODMN01001030
[ODMN] human metagenome; G_DNA_Supragingival plaque
9649
9561
-
Ser
GGA
[ENA]
¢þ
>WENV180891436
ODMQ01000110
[ODMQ] human metagenome; G_DNA_Supragingival plaque
11281
11369
+
Ser
GGA
[ENA]
¢þ
>WENV180901137
ODOJ01040879
[ODOJ] human metagenome; G_DNA_Tongue dorsum
76
164
+
Ser
GGA
[ENA]
¢þ
>WENV180921801
ODTJ01000449
[ODTJ] human metagenome; G_DNA_Supragingival plaque
21688
21600
-
Ser
GGA
[ENA]
¢þ
>WENV180921875
ODTJ01000580
[ODTJ] human metagenome; G_DNA_Supragingival plaque
17651
17563
-
Ser
GGA
[ENA]
¢þ
>WENV180923569
ODTK01000024
[ODTK] human metagenome; G_DNA_Supragingival plaque
75612
75700
+
Ser
GGA
[ENA]
¢þ
>WENV180928654
ODTM01137951
[ODTM] human metagenome; G_DNA_Supragingival plaque
68
156
+
Ser
GGA
[ENA]
¢þ
>WENV180934218
ODTR01054772
[ODTR] human metagenome; G_DNA_Supragingival plaque
213
125
-
Ser
GGA
[ENA]
¢þ
>WENV180937809
ODTX01000087
[ODTX] human metagenome; G_DNA_Supragingival plaque
25135
25223
+
Ser
GGA
[ENA]
¢þ
>WENV180945491
ODUC01180781
[ODUC] human metagenome; G_DNA_Supragingival plaque
112
200
+
Ser
GGA
[ENA]
¢þ
>WENV180951168
ODUH01010655
[ODUH] human metagenome; G_DNA_Subgingival plaque
2573
2485
-
Ser
GGA
[ENA]
¢þ
>WENV180954658
ODUJ01005839
[ODUJ] human metagenome; G_DNA_Tongue dorsum
1690
1602
-
Ser
GGA
[ENA]
¢þ
>WENV180964122
ODUO01000300
[ODUO] human metagenome; G_DNA_Supragingival plaque
14794
14882
+
Ser
GGA
[ENA]
¢þ
>WENV180973773
ODUW01018686
[ODUW] human metagenome; G_DNA_Supragingival plaque
352
264
-
Ser
GGA
[ENA]
¢þ
>WENV180975188
ODUY01002530
[ODUY] human metagenome; G_DNA_Supragingival plaque
2839
2927
+
Ser
GGA
[ENA]
¢þ
>WENV180977353
ODUZ01000426
[ODUZ] human metagenome; G_DNA_Tongue dorsum
139
51
-
Ser
GGA
[ENA]
¢þ
>WENV180980624
ODVE01000826
[ODVE] human metagenome; G_DNA_Supragingival plaque
5092
5180
+
Ser
GGA
[ENA]
¢þ
>WENV180984197
ODVF01158286
[ODVF] human metagenome; G_DNA_Supragingival plaque
68
156
+
Ser
GGA
[ENA]
¢þ
>WENV180984962
ODVJ01000201
[ODVJ] human metagenome; G_DNA_Tongue dorsum
24879
24967
+
Ser
GGA
[ENA]
¢þ
>WENV180986573
ODVK01000099
[ODVK] human metagenome; G_DNA_Supragingival plaque
23809
23897
+
Ser
GGA
[ENA]
¢þ
>WENV180986636
ODVK01000224
[ODVK] human metagenome; G_DNA_Supragingival plaque
29002
28914
-
Ser
GGA
[ENA]
¢þ
>WENV180986690
ODVK01000404
[ODVK] human metagenome; G_DNA_Supragingival plaque
206
118
-
Ser
GGA
[ENA]
¢þ
>WENV180990365
ODVN01001097
[ODVN] human metagenome; G_DNA_Tongue dorsum
12883
12795
-
Ser
GGA
[ENA]
¢þ
>WENV180992121
ODVO01053327
[ODVO] human metagenome; G_DNA_Buccal mucosa
163
75
-
Ser
GGA
[ENA]
¢þ
>WENV180992615
ODVP01063091
[ODVP] human metagenome; G_DNA_Buccal mucosa
199
111
-
Ser
GGA
[ENA]
¢þ
>WENV180998622
ODVT01001010
[ODVT] human metagenome; G_DNA_Buccal mucosa
7264
7176
-
Ser
GGA
[ENA]
¢þ
>WENV181002599
ODVX01000841
[ODVX] human metagenome; G_DNA_Supragingival plaque
16388
16476
+
Ser
GGA
[ENA]
¢þ
>WENV181006029
ODWA01000558
[ODWA] human metagenome; G_DNA_Buccal mucosa
4459
4547
+
Ser
GGA
[ENA]
¢þ
>WENV181006354
ODWA01012365
[ODWA] human metagenome; G_DNA_Buccal mucosa
133
45
-
Ser
GGA
[ENA]
¢þ
>WENV181007643
ODWE01000342
[ODWE] human metagenome; G_DNA_Supragingival plaque
11769
11681
-
Ser
GGA
[ENA]
¢þ
>WENV181010382
ODWH01004362
[ODWH] human metagenome; G_DNA_Buccal mucosa
223
311
+
Ser
GGA
[ENA]
¢þ
>WENV181012392
ODWK01000150
[ODWK] human metagenome; G_DNA_Supragingival plaque
24134
24222
+
Ser
GGA
[ENA]
¢þ
>WENV181019120
ODWU01000668
[ODWU] human metagenome; G_DNA_Supragingival plaque
16862
16774
-
Ser
GGA
[ENA]
¢þ
>WENV181029285
ODXF01000049
[ODXF] human metagenome; G_DNA_Supragingival plaque
32824
32912
+
Ser
GGA
[ENA]
¢þ
>WENV181043915
ODXV01001552
[ODXV] human metagenome; G_DNA_Tongue dorsum
4809
4897
+
Ser
GGA
[ENA]
¢þ
>WENV181049559
ODYD01000597
[ODYD] human metagenome; G_DNA_Supragingival plaque
16796
16884
+
Ser
GGA
[ENA]
¢þ
>WENV181050025
ODYD01004775
[ODYD] human metagenome; G_DNA_Supragingival plaque
621
533
-
Ser
GGA
[ENA]
¢þ
>WENV181052801
ODYG01036681
[ODYG] human metagenome; G_DNA_Tongue dorsum
9
97
+
Ser
GGA
[ENA]
¢þ
>WENV181059275
ODYM01000308
[ODYM] human metagenome; G_DNA_Tongue dorsum
4582
4670
+
Ser
GGA
[ENA]
¢þ
>WENV181063262
ODYP01000290
[ODYP] human metagenome; G_DNA_Supragingival plaque
25060
25148
+
Ser
GGA
[ENA]
¢þ
>WENV181063700
ODYP01002654
[ODYP] human metagenome; G_DNA_Supragingival plaque
8105
8017
-
Ser
GGA
[ENA]
¢þ
>WENV181066661
ODZI01000729
[ODZI] human metagenome; G_DNA_Supragingival plaque
3114
3026
-
Ser
GGA
[ENA]
¢þ
>WENV181070141
OEAE01000308
[OEAE] human metagenome; G_DNA_Supragingival plaque
12317
12229
-
Ser
GGA
[ENA]
¢þ
>WENV181076005
OEAP01001163
[OEAP] human metagenome; G_DNA_Supragingival plaque
3285
3373
+
Ser
GGA
[ENA]
¢þ
>WENV181079609
OEAS01010427
[OEAS] human metagenome; G_DNA_Supragingival plaque
753
841
+
Ser
GGA
[ENA]
¢þ
>WENV181082994
OEAV01001579
[OEAV] human metagenome; G_DNA_Supragingival plaque
7607
7519
-
Ser
GGA
[ENA]
¢þ
>WENV181084684
OEAX01000020
[OEAX] human metagenome; G_DNA_Tongue dorsum
18783
18871
+
Ser
GGA
[ENA]
¢þ
>WENV181084739
OEAX01000063
[OEAX] human metagenome; G_DNA_Tongue dorsum
22988
23076
+
Ser
GGA
[ENA]
¢þ
>WENV181085320
OEAX01005507
[OEAX] human metagenome; G_DNA_Tongue dorsum
1136
1048
-
Ser
GGA
[ENA]
¢þ
>WENV181092122
OEBC01252217
[OEBC] human metagenome; G_DNA_Supragingival plaque
205
117
-
Ser
GGA
[ENA]
¢þ
>WENV181104007
OECV01020716
[OECV] human metagenome; G_DNA_Throat
506
418
-
Ser
GGA
[ENA]
¢þ
>WENV181106928
OEEI01000781
[OEEI] human metagenome; G_DNA_Supragingival plaque
2149
2061
-
Ser
GGA
[ENA]
¢þ
>WENV181107544
OEEI01010809
[OEEI] human metagenome; G_DNA_Supragingival plaque
1620
1532
-
Ser
GGA
[ENA]
¢þ
>WENV181121186
OEFL01001171
[OEFL] human metagenome; G_DNA_Supragingival plaque
3289
3377
+
Ser
GGA
[ENA]
¢þ
>WENV181123608
OEFQ01000096
[OEFQ] human metagenome; G_DNA_Supragingival plaque
25082
25170
+
Ser
GGA
[ENA]
¢þ
>WENV181137631
OEGJ01010092
[OEGJ] human metagenome; G_DNA_Supragingival plaque
2138
2226
+
Ser
GGA
[ENA]
¢þ
>WENV181140721
OEGT01000077
[OEGT] human metagenome; G_DNA_Throat
23037
23125
+
Ser
GGA
[ENA]
¢þ
>WENV181143052
OEHM01000073
[OEHM] human metagenome; G_DNA_Supragingival plaque
70664
70576
-
Ser
GGA
[ENA]
¢þ
>WENV181146672
OEHQ01015290
[OEHQ] human metagenome; G_DNA_Supragingival plaque
112
200
+
Ser
GGA
[ENA]
¢þ
>WENV181150181
OEHW01000752
[OEHW] human metagenome; G_DNA_Tongue dorsum
7314
7226
-
Ser
GGA
[ENA]
¢þ
>WENV181153547
OEIA01129198
[OEIA] human metagenome; G_DNA_Supragingival plaque
112
200
+
Ser
GGA
[ENA]
¢þ
>WENV181155840
OEIE01000228
[OEIE] human metagenome; G_DNA_Supragingival plaque
14475
14563
+
Ser
GGA
[ENA]
¢þ
>WENV181158476
OEIH01001732
[OEIH] human metagenome; G_DNA_Supragingival plaque
2674
2586
-
Ser
GGA
[ENA]
¢þ
>WENV181158573
OEIH01003151
[OEIH] human metagenome; G_DNA_Supragingival plaque
4570
4482
-
Ser
GGA
[ENA]
¢þ
>WENV181159818
OEIK01000229
[OEIK] human metagenome; G_DNA_Supragingival plaque
24240
24328
+
Ser
GGA
[ENA]
¢þ
>WENV181177293
OEJS01000494
[OEJS] human metagenome; G_DNA_Supragingival plaque
2717
2805
+
Ser
GGA
[ENA]
¢þ
>WENV181180179
OEJT01108031
[OEJT] human metagenome; G_DNA_Supragingival plaque
206
118
-
Ser
GGA
[ENA]
¢þ
>WENV181180434
OEJU01000069
[OEJU] human metagenome; G_DNA_Supragingival plaque
23969
24057
+
Ser
GGA
[ENA]
¢þ
>WENV181181903
OEJV01000608
[OEJV] human metagenome; G_DNA_Supragingival plaque
14628
14716
+
Ser
GGA
[ENA]
¢þ
>WENV183511017
OMHV01000993
[OMHV] human oral metagenome; human oral
1242
1154
-
Ser
GGA
[ENA]
¢þ
>WENV170943045
MDTG01389508
[MDTG] marine metagenome; seawater
2201
2111
-
Ser
GGA
[ENA]
¢þ
>C181055622
CP022022
Bacteroidota
Capnocytophaga endodontalis ChDC OS43 [CP022022]
1453836
1453924
+
Ser
GGA
-
¡û
>C181063531
CP022379
Bacteroidota
Capnocytophaga sputigena D1179 [CP022379]
2345108
2345196
+
Ser
GGA
-
¡û
>C181063710
CP022383
Bacteroidota
Capnocytophaga sputigena H4486 [CP022383]
2548184
2548272
+
Ser
GGA
-
¡û
>C181063813
CP022385
Bacteroidota
Capnocytophaga sputigena KC1668 [CP022385]
1150414
1150326
-
Ser
GGA
-
¡û
>C181148106
CP027232
Bacteroidota
Capnocytophaga sp. oral taxon 864 F0512 [CP027232]
2549353
2549441
+
Ser
GGA
-
¡û
>W09108443
ABTH01000001
Bacteroidota
Capnocytophaga ochracea DSM 7271 [ABTH]
416670
416582
-
Ser
GGA
[ENA]
¡û
>W09114699
ABZV01000024
Bacteroidota
Capnocytophaga sputigena Capno [ABZV]
24931
25019
+
Ser
GGA
[ENA]
¡û
>C191212276
LR134489
Bacteroidota
Capnocytophaga sputigena NCTC11097 [LR134489]
2429688
2429776
+
Ser
GGA
-
¡û
>W09128267
ACLQ01000002
Bacteroidota
Capnocytophaga gingivalis ATCC 33624 [ACLQ]
21202
21112
-
Ser
GGA
[ENA]
¡û
>W1910919076
NIBW01000001
Bacteroidota
Capnocytophaga sputigena H6490 [NIBW]
17427
17339
-
Ser
GGA
[ENA]
¡û
>C151095895
CP012589
Bacteroidota
Capnocytophaga sp. oral taxon 323 F0383 [CP012589]
1126923
1126835
-
Ser
GGA
-
¡û
>C10103708
CP001632
Bacteroidota
Capnocytophaga ochracea DSM 7271 [CP001632]
340253
340165
-
Ser
GGA
[Ensembl]
¡û
>W1511453344
JVFB01000026
Bacteroidota
Capnocytophaga ochracea 490_CAPN [JVFB]
54296
54384
+
Ser
GGA
[ENA]
¡û
>W11141875
AEOH01000033
Bacteroidota
Capnocytophaga ochracea F0287 [AEOH]
85340
85252
-
Ser
GGA
[ENA]
¡û
>W1511592771
LBIQ01000030
Bacteroidota
Mangrovimonas sp. ST2L15 [LBIQ]
93715
93625
-
Ser
GGA
[ENA]
¡û
>W121073518
AJZR01000031
Bacteroidota
Capnocytophaga sp. oral taxon 412 oral taxon 412 str. F0487 [AJZR]
27256
27344
+
Ser
GGA
[ENA]
¡û
>W121081346
AKFR01000031
Bacteroidota
Capnocytophaga sp. oral taxon 335 oral taxon 335 str. F0486 [AKFR]
73914
74002
+
Ser
GGA
[ENA]
¡û
>W121081515
AKFV01000010
Bacteroidota
Capnocytophaga ochracea str. Holt 25 [AKFV]
123212
123124
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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