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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.170513 (62 seq.)
>W1711221595
LXRG01000065
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
358215
358291
+
Val
GAC
[ENA]
¡û
>W1711221596
LXRG01000065
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
358314
358390
+
Val
GAC
[ENA]
¡û
>W1711434638
MINL01000001
Gammaproteobacteria
Halomonas sp. QHL1 [MINL]
1010608
1010532
-
Val
GAC
[ENA]
¡û
>W1711434639
MINL01000001
Gammaproteobacteria
Halomonas sp. QHL1 [MINL]
1010508
1010432
-
Val
GAC
[ENA]
¡û
>W1711434640
MINL01000001
Gammaproteobacteria
Halomonas sp. QHL1 [MINL]
1010408
1010332
-
Val
GAC
[ENA]
¡û
>W131095846
AOPO01000004
Gammaproteobacteria
Halomonas titanicae BH1 [AOPO]
55987
55911
-
Val
GAC
[ENA]
¡û
>W141252194
CBRE010000107
Gammaproteobacteria
Halomonas sp. A3H3 [CBRE]
119315
119391
+
Val
GAC
[ENA]
¡û
>W141275893
JADJ01000011
Gammaproteobacteria
Halomonas sp. 23_GOM-1509m [JADJ]
250404
250480
+
Val
GAC
[ENA]
¡û
>WENV183057116
OLHK01003780
[OLHK] seawater metagenome; Sea water
1423
1499
+
Val
GAC
[ENA]
¡û
>WENV170112335
CEGE01001911
[CEGE] microbial mat metagenome; grass silage
4934
4858
-
Val
GAC
[ENA]
¡û
>WENV170112492
CEGF01001358
[CEGF] microbial mat metagenome; grass silage
1234
1310
+
Val
GAC
[ENA]
¡û
>WENV170112654
CEGF01009207
[CEGF] microbial mat metagenome; grass silage
328
252
-
Val
GAC
[ENA]
¡û
>WENV170112676
CEGF01011775
[CEGF] microbial mat metagenome; grass silage
316
240
-
Val
GAC
[ENA]
¡û
>WENV170260259
CEQZ01004755
[CEQZ] marine metagenome genome assembly TARA_070_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
179
103
-
Val
GAC
[ENA]
¡û
>WENV170692792
LGOV01031401
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
3190
3114
-
Val
GAC
[ENA]
¡û
>WENV170699951
LGVF01686790
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1252
1176
-
Val
GAC
[ENA]
¡û
>C191007742
AP019416
Gammaproteobacteria
Halomonas olivaria TYRC17 [AP019416]
2212982
2213058
+
Val
GAC
-
¡û
>C191165473
CP039374
Gammaproteobacteria
Halomonas titanicae ANRCS81 [CP039374]
4135279
4135355
+
Val
GAC
-
¡û
>W141564652
JIAY01000009
Gammaproteobacteria
Halomonas sp. 19A_GOM-1509m [JIAY]
56007
55931
-
Val
GAC
[ENA]
¡û
>W141818895
JQLV01000001
Gammaproteobacteria
Halomonas sp. TG39a [JQLV]
2173648
2173572
-
Val
GAC
[ENA]
¡û
>W1910006956
BBQX01000031
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
13866
13790
-
Val
GAC
[ENA]
¡û
>W1911148579
NPEY01000013
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
59391
59315
-
Val
GAC
[ENA]
¡û
>W1810156481
PJBI01000049
Gammaproteobacteria
Halomonas sp. Choline-3u-9 [PJBI]
249509
249585
+
Val
GAC
[ENA]
¡û
>C151104140
LN813019
Gammaproteobacteria
Halomonas sp. R57-5 [LN813019]
2408653
2408729
+
Val
GAC
-
¡û
>W2010075314
BBQX01000031
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
13866
13790
-
Val
GAC
[ENA]
¡û
>W2010311134
CABWMN010000030
Gammaproteobacteria
Halomonas sp. 98 [CABWMN]
56457
56381
-
Val
GAC
[ENA]
¡û
>W2010311156
CABWMO010000011
Gammaproteobacteria
Halomonas sp. 153 [CABWMO]
56457
56381
-
Val
GAC
[ENA]
¡û
>W2010643358
JABWTB010000006
Gammaproteobacteria
Halomonas titanicae TAT1 [JABWTB]
55937
55861
-
Val
GAC
[ENA]
¡û
>W2010676045
JACCGK010000020
Gammaproteobacteria
Halomonas sp. QX-2 [JACCGK]
59062
58986
-
Val
GAC
[ENA]
¡û
>W2011021510
NPEY01000013
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
59391
59315
-
Val
GAC
[ENA]
¡û
>W2011657169
SOCZ01000023
Gammaproteobacteria
Halomonas alkaliantarctica CRSS [SOCZ]
57995
57919
-
Val
GAC
[ENA]
¡û
>W2011978551
VCQL01000033
Gammaproteobacteria
Halomonas sp. ATBC28 [VCQL]
397
321
-
Val
GAC
[ENA]
¡û
>W2012094248
VNFE01000005
Gammaproteobacteria
Halomonas titanicae SM1922 [VNFE]
326388
326464
+
Val
GAC
[ENA]
¡û
>W2012352340
WJPH01000012
Gammaproteobacteria
Halomonas sp. MG34 [WJPH]
51098
51174
+
Val
GAC
[ENA]
¡û
>W2110098331
CAJFDU010000027
Gammaproteobacteria
Halomonas sp. 113 [CAJFDU]
57179
57103
-
Val
GAC
[ENA]
¡û
>W2110098452
CAJFDW010000027
Gammaproteobacteria
Halomonas sp. 59 [CAJFDW]
56457
56381
-
Val
GAC
[ENA]
¡û
>W2110098545
CAJFDZ010000004
Gammaproteobacteria
Halomonas sp. 156 [CAJFDZ]
286622
286698
+
Val
GAC
[ENA]
¡û
>W2110098742
CAJFEC010000031
Gammaproteobacteria
Halomonas sp. I3 [CAJFEC]
56457
56381
-
Val
GAC
[ENA]
¡û
>W2110177020
JABFAT010000014
Gammaproteobacteria
Halomonas sp. KRD171 [JABFAT]
420619
420695
+
Val
GAC
[ENA]
¡û
>W2110220275
JACIVL010000012
Gammaproteobacteria
Halomonas neptunia DSM 15720 [JACIVL]
72693
72769
+
Val
GAC
[ENA]
¡û
>W2110546375
JAGGRM010000006
Gammaproteobacteria
Halomonas sp. ISL-104 [JAGGRM]
358348
358424
+
Val
GAC
[ENA]
¡û
>W2110546376
JAGGRM010000006
Gammaproteobacteria
Halomonas sp. ISL-104 [JAGGRM]
358447
358523
+
Val
GAC
[ENA]
¡û
>W2110546443
JAGGRN010000015
Gammaproteobacteria
Halomonas sp. ISL-106 [JAGGRN]
358215
358291
+
Val
GAC
[ENA]
¡û
>W2110546444
JAGGRN010000015
Gammaproteobacteria
Halomonas sp. ISL-106 [JAGGRN]
358314
358390
+
Val
GAC
[ENA]
¡û
>W2110546499
JAGGRO010000021
Gammaproteobacteria
Halomonas sp. ISL-56 [JAGGRO]
56313
56237
-
Val
GAC
[ENA]
¡û
>W2110546535
JAGGRP010000025
Gammaproteobacteria
Halomonas sp. ISL-60 [JAGGRP]
35299
35223
-
Val
GAC
[ENA]
¡û
>W2110577306
JAGWDL010000008
Gammaproteobacteria
Halomonas boliviensis kknpp38 [JAGWDL]
56855
56779
-
Val
GAC
[ENA]
¡û
>C201087759
CP040451
Gammaproteobacteria
Halomonas sp. PA16-9 [CP040451]
2899999
2899923
-
Val
GAC
-
¡û
>C211119350
CP059082
Gammaproteobacteria
Halomonas titanicae SOB56 [CP059082]
3419657
3419733
+
Val
GAC
-
¡û
>C231136171
CP074200
Gammaproteobacteria
Halomonas sp. FeN2 [CP074200]
4735626
4735702
+
Val
GAC
-
¡û
>C231226814
CP086344
Gammaproteobacteria
Halomonas profundus 13 [CP086344]
2767612
2767536
-
Val
GAC
-
¡û
>C231534370
CP110535
Gammaproteobacteria
Halomonas sp. BDJS001 [CP110535]
2607231
2607155
-
Val
GAC
-
¡û
>W2110776109
VOGA01000016
Gammaproteobacteria
Halomonas sp. SBBP1 [VOGA]
56693
56617
-
Val
GAC
[ENA]
¡û
>C231649511
CP122961
Gammaproteobacteria
Halomonas alkaliantarctica MSP3 [CP122961]
2308255
2308179
-
Val
GAC
-
¡û
>W2130009104
CAJSTI010002755
Gammaproteobacteria
Halomonas elongata [CAJSTI]
1
77
+
Val
GAC
[ENA]
¡û
>C241167526
CP054580
Gammaproteobacteria
Vreelandella titanicae GPM3 [CP054580]
1661936
1661860
-
Val
GAC
-
¡û
>W1511479199
JWHY01000005
Gammaproteobacteria
Halomonas sp. KHS3 [JWHY]
57648
57572
-
Val
GAC
[ENA]
¡û
>W121016481
AGQZ01000071
Gammaproteobacteria
Halomonas boliviensis LC1 [AGQZ]
34606
34530
-
Val
GAC
[ENA]
¡û
>W1611006064
LXRG01000065
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
358215
358291
+
Val
GAC
[ENA]
¡û
>W1611006065
LXRG01000065
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
358314
358390
+
Val
GAC
[ENA]
¡û
>W1710518737
FNEF01000010
Gammaproteobacteria
Halomonas titanicae DSM 26667 [FNEF]
56469
56393
-
Val
GAC
[ENA]
¡û
>W1710628345
JPUA01000026
Gammaproteobacteria
Halomonas campaniensis [JPUA]
235332
235408
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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