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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.170813 (32 seq.)
>W1710989917
LPWG01000011
Alphaproteobacteria
Methyloceanibacter methanicus [LPWG]
306241
306317
+
Arg
CCT
[ENA]
¡û
>WENV180291642
OBIV01114225
[OBIV] soil metagenome; Clay
176
252
+
Arg
CCT
[ENA]
¡û
>WENV181162714
OEIO01008410
[OEIO] marine metagenome; sea ice
293
217
-
Arg
CCT
[ENA]
¡û
>WENV181304818
OFIC01012116
[OFIC] marine metagenome; sea ice
367
443
+
Arg
CCT
[ENA]
¡û
>WENV181309915
OFIY01006418
[OFIY] marine metagenome; sea ice
155
232
+
Arg
CCT
[ENA]
¡û
>WENV183623296
OOFX01057973
[OOFX] marine metagenome; sea ice
128
52
-
Arg
CCT
[ENA]
¡û
>WENV170200663
CEPO01003905
[CEPO] marine metagenome genome assembly TARA_041_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
54687
54611
-
Arg
CCT
[ENA]
¡û
>WENV170428239
CEUQ01388318
[CEUQ] marine metagenome genome assembly TARA_124_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
343
419
+
Arg
CCT
[ENA]
¡û
>C181067705
CP022529
Alphaproteobacteria
Labrenzia sp. VG12 [CP022529]
4043056
4043132
+
Arg
CCT
-
¡û
>W1911765981
QXDF01000001
Alphaproteobacteria
Dichotomicrobium thermohalophilum DSM 5002 [QXDF]
319534
319458
-
Arg
CCT
[ENA]
¡û
>C151104307
LN829118
Alphaproteobacteria
Candidatus Filomicrobium marinum strain W [LN829118]
958541
958465
-
Arg
CCT
[Ensembl]
¡û
>W2010559960
JAASQO010000010
Alphaproteobacteria
Parvibaculum indicum DSM 25305 [JAASQO]
88433
88509
+
Arg
CCT
[ENA]
¡û
>W2010612764
JABRXF010000001
Alphaproteobacteria
Rhizobiales bacterium SY4-7 [JABRXF]
957071
956995
-
Arg
CCT
[ENA]
¡û
>W2011637769
SMLZ01000114
Alphaproteobacteria
Roseibium denhamense JCM 10543 [SMLZ]
148225
148301
+
Arg
CCT
[ENA]
¡û
>W2011655833
SOCB01000016
Alphaproteobacteria
Labrenzia sp. PT13C1 [SOCB]
238320
238396
+
Arg
CCT
[ENA]
¡û
>W2012041358
VIRH01000097
Alphaproteobacteria
Rhodobacterales bacterium BW5 [VIRH]
46787
46863
+
Arg
CCT
[ENA]
¡û
>W2012445246
WUMV01000003
Alphaproteobacteria
Stappia sp. GBMRC 2046 [WUMV]
335927
335851
-
Arg
CCT
[ENA]
¡û
>W2110363108
JADOUJ010000005
Alphaproteobacteria
Labrenzia sp. EL_142 [JADOUJ]
27008
26932
-
Arg
CCT
[ENA]
¡û
>W2110423757
JAEKJZ010000006
Alphaproteobacteria
Roseibium aggregatum SY-2-12 [JAEKJZ]
338729
338653
-
Arg
CCT
[ENA]
¡û
>W2110548196
JAGHRJ010000005
Alphaproteobacteria
Labrenzia sp. R4_2 [JAGHRJ]
229251
229327
+
Arg
CCT
[ENA]
¡û
>C211115633
CP058214
Alphaproteobacteria
Alphaproteobacteria bacterium R1DC25 [CP058214]
2331346
2331270
-
Arg
CCT
-
¡û
>W2110754570
NSLC01000001
Alphaproteobacteria
Afifella sp. IM 167 [NSLC]
290149
290073
-
Arg
CCT
[ENA]
¡û
>C231562594
CP114786
Alphaproteobacteria
Roseibium sp. Sym1 [CP114786]
1961121
1961045
-
Arg
CCT
-
¡û
>C241094862
CP045328
Alphaproteobacteria
Labrenzia sp. THAF191b [CP045328]
1594750
1594674
-
Arg
CCT
-
¡û
>C241094914
CP045333
Alphaproteobacteria
Labrenzia sp. THAF191a [CP045333]
1594750
1594674
-
Arg
CCT
-
¡û
>C241095084
CP045344
Alphaproteobacteria
Labrenzia sp. THAF187b [CP045344]
1594750
1594674
-
Arg
CCT
-
¡û
>C241167127
CP054476
Alphaproteobacteria
Methyloligella sp. GL2 [CP054476]
700213
700137
-
Arg
CCT
-
¡û
>C241242726
CP120863
Alphaproteobacteria
Roseibium porphyridii KMA01 [CP120863]
669849
669773
-
Arg
CCT
-
¡û
>W1610092218
CXWD01000007
Alphaproteobacteria
Roseibium alexandrii [CXWD]
180991
180915
-
Arg
CCT
[ENA]
¡û
>W1610092251
CXWE01000003
Alphaproteobacteria
Roseibium album alba [CXWE]
414216
414292
+
Arg
CCT
[ENA]
¡û
>W1710095575
CXWD01000007
Alphaproteobacteria
Roseibium alexandrii [CXWD]
180991
180915
-
Arg
CCT
[ENA]
¡û
>W1710095608
CXWE01000003
Alphaproteobacteria
Roseibium album alba [CXWE]
414216
414292
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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