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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.170872 (89 seq.)
>W1711144405
LVIC01000063
Gammaproteobacteria
Alcanivorax sp. KX64203 [LVIC]
380
456
+
Ile
GAT
[ENA]
¡û
>W1711224003
LXTS01000438
Gammaproteobacteria
Alcanivorax sp. CP2C [LXTS]
361
437
+
Ile
GAT
[ENA]
¡û
>W1711312223
MASR01000006
Gammaproteobacteria
Pseudohongiella acticola [MASR]
3674
3598
-
Ile
GAT
[ENA]
¡û
>WENV180310236
OBJS01354303
[OBJS] beach sand metagenome; beach sand
2
78
+
Ile
GAT
[ENA]
¡û
>W141152610
AXBX01000078
Gammaproteobacteria
Alcanivorax sp. PN-3 [AXBX]
345
269
-
Ile
GAT
[ENA]
¡û
>W141191411
AYOZ01000031
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
71
147
+
Ile
GAT
[ENA]
¡û
>WENV182547538
OJBS01023549
[OJBS] seawater metagenome; Sea water
470
394
-
Ile
GAT
[ENA]
¡û
>WENV182567942
OJEP01004383
[OJEP] seawater metagenome; Sea water
162
238
+
Ile
GAT
[ENA]
¡û
>WENV182591938
OJIO01020317
[OJIO] seawater metagenome; Sea water
843
767
-
Ile
GAT
[ENA]
¡û
>WENV183522383
OMOM01015667
[OMOM] seawater metagenome; Sea water
447
371
-
Ile
GAT
[ENA]
¡û
>WENV170014826
AZIC01000011
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
144
220
+
Ile
GAT
[ENA]
¡û
>WENV170130532
CENR01007003
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
117
193
+
Ile
GAT
[ENA]
¡û
>WENV170436261
CEUT01035015
[CEUT] marine metagenome genome assembly TARA_125_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
154
230
+
Ile
GAT
[ENA]
¡û
>WENV170740305
LULR01004940
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
1258
1334
+
Ile
GAT
[ENA]
¡û
>WENV170744590
LULX01003946
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
1644
1568
-
Ile
GAT
[ENA]
¡û
>WENV170781965
MAAC01005777
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
423
347
-
Ile
GAT
[ENA]
¡û
>WENV170964795
MRWG01045753
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
120
196
+
Ile
GAT
[ENA]
¡û
>W09126336
ACJO01000009
Gammaproteobacteria
Halothiobacillus neapolitanus c2 [ACJO]
58609
58533
-
Ile
GAT
[ENA]
¡û
>W1911585865
PIQF01000006
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
3400
3324
-
Ile
GAT
[ENA]
¡û
>W1911717885
QQTE01000007
Gammaproteobacteria
Idiomarina sp. HD9-110m-PIT-SAG05 [QQTE]
1949
2025
+
Ile
GAT
[ENA]
¡û
>W1810444828
PZJW01000013
Gammaproteobacteria
Salinicola acroporae LMG 28587 [PZJW]
1964
2040
+
Ile
GAT
[ENA]
¡û
>W1810609580
QGUA01000002
Gammaproteobacteria
Idiomarina loihiensis H2.2 [QGUA]
3568
3492
-
Ile
GAT
[ENA]
¡û
>W2011222099
PTXN01000039
Gammaproteobacteria
Marinomonas sp. UCMA 3892 UCMA3892 [PTXN]
551
627
+
Ile
GAT
[ENA]
¡û
>W2011431082
RIZG01000020
Gammaproteobacteria
Marinomonas hwangdonensis HDW-15 [RIZG]
3879
3803
-
Ile
GAT
[ENA]
¡û
>W2011530604
SBHR01000005
Gammaproteobacteria
Endozoicomonadaceae bacterium GTF-13 [SBHR]
3598
3522
-
Ile
GAT
[ENA]
¡û
>W2011645469
SNUA01000047
Gammaproteobacteria
Alcanivorax sp. 24 [SNUA]
560
484
-
Ile
GAT
[ENA]
¡û
>W2011647333
SNVZ01000015
Gammaproteobacteria
Halothiobacillus neapolitanus DSM 15147 [SNVZ]
3797
3721
-
Ile
GAT
[ENA]
¡û
>W2011858093
UNRD01000007
Gammaproteobacteria
Alcanivorax sp. Alg238-V104 [UNRD]
160122
160046
-
Ile
GAT
[ENA]
¡û
>W2011978786
VCQT01000003
Gammaproteobacteria
Alcanivorax gelatiniphagus MEBiC 08158 [VCQT]
53
129
+
Ile
GAT
[ENA]
¡û
>W2012507247
WXVX01000057
Gammaproteobacteria
Alcanivorax sp. ZXX171 [WXVX]
399
323
-
Ile
GAT
[ENA]
¡û
>W2110010927
ARXX01000117
Gammaproteobacteria
Alcanivorax profundimaris 521-1 [ARXX]
54
130
+
Ile
GAT
[ENA]
¡û
>W2110180508
JABJWH010000041
Gammaproteobacteria
Alcanivorax profundimaris ST75FaO-1 [JABJWH]
406
330
-
Ile
GAT
[ENA]
¡û
>W2110482949
JAFEKF010000014
Gammaproteobacteria
Marinomonas ostreistagni UST010306-043 [JAFEKF]
596
520
-
Ile
GAT
[ENA]
¡û
>W2110617723
JAHLLW010000042
Gammaproteobacteria
Marinomonas sp. E165 [JAHLLW]
1922
1998
+
Ile
GAT
[ENA]
¡û
>C201262669
CP053420
Gammaproteobacteria
Alcanivorax sp. IO_7 [CP053420]
1906562
1906486
-
Ile
GAT
-
¡û
>C211141973
CP061081
Gammaproteobacteria
Marinomonas arctica BSI20414 [CP061081]
894933
895009
+
Ile
GAT
-
¡û
>C211141975
CP061081
Gammaproteobacteria
Marinomonas arctica BSI20414 [CP061081]
1185020
1185096
+
Ile
GAT
-
¡û
>C211142021
CP061081
Gammaproteobacteria
Marinomonas arctica BSI20414 [CP061081]
3701790
3701714
-
Ile
GAT
-
¡û
>C211155478
CP061941
Gammaproteobacteria
Marinomonas algicola SM1966 [CP061941]
1969569
1969645
+
Ile
GAT
-
¡û
>C211155489
CP061941
Gammaproteobacteria
Marinomonas algicola SM1966 [CP061941]
4002660
4002584
-
Ile
GAT
-
¡û
>C211155504
CP061941
Gammaproteobacteria
Marinomonas algicola SM1966 [CP061941]
3400691
3400615
-
Ile
GAT
-
¡û
>W2110716921
JAJATW010000074
Gammaproteobacteria
Marinomonas sp. E8 [JAJATW]
590
514
-
Ile
GAT
[ENA]
¡û
>C211388123
CP081832
Gammaproteobacteria
Idiomarina abyssalis MSP-CT [CP081832]
663542
663618
+
Ile
GAT
-
¡û
>C211388141
CP081832
Gammaproteobacteria
Idiomarina abyssalis MSP-CT [CP081832]
2548443
2548367
-
Ile
GAT
-
¡û
>C211388145
CP081832
Gammaproteobacteria
Idiomarina abyssalis MSP-CT [CP081832]
2236594
2236518
-
Ile
GAT
-
¡û
>C211388149
CP081832
Gammaproteobacteria
Idiomarina abyssalis MSP-CT [CP081832]
1857206
1857130
-
Ile
GAT
-
¡û
>C231039222
CP031009
Gammaproteobacteria
Alcanivorax sp. ALC70 [CP031009]
1429271
1429195
-
Ile
GAT
-
¡û
>C231056836
CP047694
Gammaproteobacteria
Marinomonas mediterranea MMB-3 (CPR1) [CP047694]
4163974
4163898
-
Ile
GAT
-
¡û
>C231056840
CP047694
Gammaproteobacteria
Marinomonas mediterranea MMB-3 (CPR1) [CP047694]
3991575
3991499
-
Ile
GAT
-
¡û
>C231056842
CP047694
Gammaproteobacteria
Marinomonas mediterranea MMB-3 (CPR1) [CP047694]
3527550
3527474
-
Ile
GAT
-
¡û
>C231056922
CP047695
Gammaproteobacteria
Marinomonas mediterranea MMB-2 (IVIA-Po-186) [CP047695]
4148285
4148209
-
Ile
GAT
-
¡û
>C231056926
CP047695
Gammaproteobacteria
Marinomonas mediterranea MMB-2 (IVIA-Po-186) [CP047695]
3974039
3973963
-
Ile
GAT
-
¡û
>C231056928
CP047695
Gammaproteobacteria
Marinomonas mediterranea MMB-2 (IVIA-Po-186) [CP047695]
3501690
3501614
-
Ile
GAT
-
¡û
>C231057008
CP047696
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP047696]
4171244
4171168
-
Ile
GAT
-
¡û
>C231057012
CP047696
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP047696]
3988205
3988129
-
Ile
GAT
-
¡û
>C231057014
CP047696
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP047696]
3529724
3529648
-
Ile
GAT
-
¡û
>C231130895
CP073343
Gammaproteobacteria
Marinomonas rhizomae MB12-11 [CP073343]
989913
989989
+
Ile
GAT
-
¡û
>C231130897
CP073343
Gammaproteobacteria
Marinomonas rhizomae MB12-11 [CP073343]
1240057
1240133
+
Ile
GAT
-
¡û
>C231130910
CP073343
Gammaproteobacteria
Marinomonas rhizomae MB12-11 [CP073343]
4176364
4176288
-
Ile
GAT
-
¡û
>C231135820
CP074073
Gammaproteobacteria
Idiomarina loihiensis SN11 [CP074073]
1736
1812
+
Ile
GAT
-
¡û
>C231135824
CP074073
Gammaproteobacteria
Idiomarina loihiensis SN11 [CP074073]
416607
416683
+
Ile
GAT
-
¡û
>C231135846
CP074073
Gammaproteobacteria
Idiomarina loihiensis SN11 [CP074073]
2499822
2499898
+
Ile
GAT
-
¡û
>C231135856
CP074073
Gammaproteobacteria
Idiomarina loihiensis SN11 [CP074073]
1662883
1662807
-
Ile
GAT
-
¡û
>C241327866
CP136538
Gammaproteobacteria
Alloalcanivorax xenomutans GOM8 [CP136538]
3823043
3822967
-
Ile
GAT
-
¡û
>W2310007138
ARXS01000056
Gammaproteobacteria
Alloalcanivorax balearicus MACL04 [ARXS]
62
138
+
Ile
GAT
[ENA]
¡û
>C10107614
CP001801
Gammaproteobacteria
Halothiobacillus neapolitanus c2 [CP001801]
575391
575467
+
Ile
GAT
[Ensembl]
¡û
>C10107631
CP001801
Gammaproteobacteria
Halothiobacillus neapolitanus c2 [CP001801]
2294932
2294856
-
Ile
GAT
[Ensembl]
¡û
>C11114675
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
4143001
4142925
-
Ile
GAT
[Ensembl]
¡û
>C11114679
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
3959960
3959884
-
Ile
GAT
[Ensembl]
¡û
>C11114681
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
3501685
3501609
-
Ile
GAT
[Ensembl]
¡û
>C11114993
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
801954
802030
+
Ile
GAT
[Ensembl]
¡û
>C11115034
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
3626767
3626691
-
Ile
GAT
[Ensembl]
¡û
>C11115039
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
2854460
2854384
-
Ile
GAT
[Ensembl]
¡û
>W1511569420
LAJX01000362
Gammaproteobacteria
Methylocucumis oryzae Sn10-6 [LAJX]
1963
2039
+
Ile
GAT
[ENA]
¡û
>C121016519
FP929140
Gammaproteobacteria
gamma proteobacterium HdN1 [FP929140]
20793
20869
+
Ile
GAT
[Ensembl]
¡û
>C121016521
FP929140
Gammaproteobacteria
gamma proteobacterium HdN1 [FP929140]
443769
443845
+
Ile
GAT
[Ensembl]
¡û
>C121016531
FP929140
Gammaproteobacteria
gamma proteobacterium HdN1 [FP929140]
1092078
1092154
+
Ile
GAT
[Ensembl]
¡û
>C131016274
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
2752667
2752591
-
Ile
GAT
[Ensembl]
¡û
>C131016278
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
2436326
2436250
-
Ile
GAT
[Ensembl]
¡û
>C131016282
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
2027514
2027438
-
Ile
GAT
[Ensembl]
¡û
>C131016295
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
1266659
1266583
-
Ile
GAT
[Ensembl]
¡û
>W1610504062
FLOE01000041
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
163
239
+
Ile
GAT
[ENA]
¡û
>W1610504066
FLOE01000043
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
638
562
-
Ile
GAT
[ENA]
¡û
>W1610506756
FLRB01000031
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
587
511
-
Ile
GAT
[ENA]
¡û
>W1610616506
LGOW01000020
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
1774
1850
+
Ile
GAT
[ENA]
¡û
>W1610955413
LVIC01000063
Gammaproteobacteria
Alcanivorax sp. KX64203 [LVIC]
380
456
+
Ile
GAT
[ENA]
¡û
>W1611008374
LXTS01000438
Gammaproteobacteria
Alcanivorax sp. CP2C [LXTS]
361
437
+
Ile
GAT
[ENA]
¡û
>ENV002839
AY934325
Environmental sample from ENV division of INSDC
86
164
+
Ile
GAT
[ENA]
>W1710741641
LGOW01000020
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
1774
1850
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK