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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.170905 (34 seq.)
>W131227572
AUFG01000017
Actinomycetota
Arsenicicoccus bolidensis DSM 15745 [AUFG]
67333
67409
+
Pro
TGG
[ENA]
¡û
>WENV181000296
ODVU01002864
[ODVU] human metagenome; G_DNA_Anterior nares
490
414
-
Pro
TGG
[ENA]
¡û
>WENV181131108
OEFZ01010088
[OEFZ] human metagenome; G_DNA_Anterior nares
80
4
-
Pro
TGG
[ENA]
¡û
>WENV182828284
OKDF01000768
[OKDF] human gut metagenome; human gut
5224
5148
-
Pro
TGG
[ENA]
¡û
>WENV170010556
APMI01020440
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1546
1470
-
Pro
TGG
[ENA]
¡û
>WENV170011730
APMI01086218
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4
80
+
Pro
TGG
[ENA]
¡û
>WENV170012029
APMI01112709
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1298
1374
+
Pro
TGG
[ENA]
¡û
>C181200511
CP031447
Actinomycetota
Austwickia chelonae LK16-18 [CP031447]
1564078
1564154
+
Pro
TGG
-
¡û
>W09108528
ABTI01000106
Actinomycetota
Catenulispora acidiphila DSM 44928 [ABTI]
3493
3569
+
Pro
TGG
[ENA]
¡û
>C151048665
CP009312
Actinomycetota
Lawsonella clevelandensis X1036 [CP009312]
1586964
1587040
+
Pro
TGG
-
¡û
>C151090452
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
2073640
2073716
+
Pro
TGG
-
¡û
>C151094698
CP012390
Actinomycetota
Lawsonella clevelandensis X1698 [CP012390]
1641517
1641593
+
Pro
TGG
-
¡û
>W2010670606
JACCBC010000001
Actinomycetota
Kineosphaera limosa DSM 14548 [JACCBC]
4341973
4342049
+
Pro
TGG
[ENA]
¡û
>W2011954262
UXFY01000024
Actinomycetota
Lawsonella clevelandensis [UXFY]
77447
77523
+
Pro
TGG
[ENA]
¡û
>W2011957349
UYZX01000001
Actinomycetota
Gulosibacter sp. Marseille-P7157 [UYZX]
966791
966715
-
Pro
TGG
[ENA]
¡û
>W2012371461
WLVL01000018
Actinomycetota
Arsenicicoccus sp. MKL-02 [WLVL]
63551
63475
-
Pro
TGG
[ENA]
¡û
>W2110137162
JAACYW010000031
Actinomycetota
Catenulispora rubra DSM 44948 [JAACYW]
36277
36203
-
Pro
TGG
[ENA]
¡û
>W2110203265
JACEGI010000240
Actinomycetota
Catenulispora pinisilvae NF3 [JACEGI]
12103
12029
-
Pro
TGG
[ENA]
¡û
>W2110203296
JACEGJ010000077
Actinomycetota
Catenulispora sp. NF23 [JACEGJ]
10697
10623
-
Pro
TGG
[ENA]
¡û
>W2110637502
JAHPZL010000008
Actinomycetota
Austwickia sp. TVS 96-490-7B [JAHPZL]
615058
614982
-
Pro
TGG
[ENA]
¡û
>C201245992
CP051155
Actinomycetota
Mobilicoccus sp. NJES-13 [CP051155]
861407
861332
-
Pro
TGG
-
¡û
>C211197320
CP064985
Actinomycetota
Austwickia sp. [CP064985]
3369367
3369443
+
Pro
TGG
-
¡û
>C231216177
CP085839
Actinomycetota
Nocardioides sp. Kera G14 [CP085839]
806890
806964
+
Pro
TGG
-
¡û
>W2130010078
JAAFYZ010000082
Actinomycetota
Catenulispora sp. NL8 [JAAFYZ]
27012
27086
+
Pro
TGG
[ENA]
¡û
>W2130010141
JAAFZA010000160
Actinomycetota
Catenulispora pinisilvae NH11 [JAAFZA]
20969
21043
+
Pro
TGG
[ENA]
¡û
>C10102579
CP001700
Actinomycetota
Catenulispora acidiphila DSM 44928 [CP001700]
8517444
8517368
-
Pro
TGG
[Ensembl]
¡û
>W2310030124
BSUJ01000001
Actinomycetota
Arsenicicoccus piscis NBRC 105830 [BSUJ]
659767
659842
+
Pro
TGG
[ENA]
¡û
>W2310030331
BSUO01000001
Actinomycetota
Mobilicoccus caccae NBRC 113072 [BSUO]
1131261
1131335
+
Pro
TGG
[ENA]
¡û
>W1610062590
BCNQ01000113
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
9351
9427
+
Pro
TGG
[ENA]
¡û
>W121126428
BAGZ01000005
Actinomycetota
Austwickia chelonae NBRC 105200 [BAGZ]
357269
357193
-
Pro
TGG
[ENA]
¡û
>W121126641
BAHD01000050
Actinomycetota
Kineosphaera limosa NBRC 100340 [BAHD]
14623
14699
+
Pro
TGG
[ENA]
¡û
>WENV077500
AAFX01048659
Soil microbial communities from Minnesota Farm
578
502
-
Pro
TGG
[ENA]
>W1710060066
BCNQ01000113
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
9351
9427
+
Pro
TGG
[ENA]
¡û
>W1710555153
FOJD01000001
Actinomycetota
Austwickia chelonae [FOJD]
1344329
1344253
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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