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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.17108 (65 seq.)
>W1710900544
LNKA01000010
Gammaproteobacteria
Legionella adelaidensis [LNKA]
76776
76686
-
Ser
GCT
[ENA]
¡û
>W1710920283
LNYK01000016
Gammaproteobacteria
Legionella londiniensis [LNYK]
113529
113619
+
Ser
GCT
[ENA]
¡û
>W1711414055
MGXL01000141
Gammaproteobacteria
Gammaproteobacteria bacterium RBG_16_57_12 [MGXL]
6274
6364
+
Ser
GCT
[ENA]
¡û
>W1711767957
MVBK01000010
Gammaproteobacteria
Thioalkalivibrio denitrificans [MVBK]
40408
40498
+
Ser
GCT
[ENA]
¡û
>W131163148
AQZO01000003
Gammaproteobacteria
Thioalkalivibrio thiocyanodenitrificans ARhD 1 [AQZO]
7774
7684
-
Ser
GCT
[ENA]
¡û
>W131175473
ARJH01000043
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus ALJ17 [ARJH]
14830
14920
+
Ser
GCT
[ENA]
¡û
>WENV180021281
FTEF01001290
[FTEF] metagenome; soil
2437
2527
+
Ser
GCT
[ENA]
¢þ
>WENV180021982
FTFH01001336
[FTFH] metagenome; soil
2
92
+
Ser
GCT
[ENA]
¢þ
>WENV180023045
FTHH01000670
[FTHH] metagenome; soil
8705
8615
-
Ser
GCT
[ENA]
¢þ
>WENV180031205
FTJO01009226
[FTJO] metagenome; soil
1348
1438
+
Ser
GCT
[ENA]
¢þ
>WENV180032210
FTJX01041975
[FTJX] metagenome; soil
176
266
+
Ser
GCT
[ENA]
¢þ
>WENV180036638
FVAA010228971
[FVAA] soil metagenome; Soil
91
1
-
Ser
GCT
[ENA]
¢þ
>WENV180095836
MTBK01092603
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
162
252
+
Ser
GCT
[ENA]
¢þ
>WENV180266013
OBEQ011711293
[OBEQ] groundwater metagenome; groundwater
318
228
-
Ser
GCT
[ENA]
¢þ
>WENV180282456
OBIC01000010
[OBIC] beach sand metagenome; beach sand
143132
143222
+
Ser
GCT
[ENA]
¢þ
>WENV180293511
OBIY01000012
[OBIY] beach sand metagenome; beach sand
62699
62789
+
Ser
GCT
[ENA]
¢þ
>WENV180297228
OBJA01016281
[OBJA] soil metagenome; sediment, water from around vicinity
2110
2020
-
Ser
GCT
[ENA]
¢þ
>WENV180304132
OBJH01059309
[OBJH] soil metagenome; soil
21
111
+
Ser
GCT
[ENA]
¢þ
>WENV180304332
OBJI01002474
[OBJI] soil metagenome; soil
919
829
-
Ser
GCT
[ENA]
¢þ
>WENV180309149
OBJR01594967
[OBJR] soil metagenome; soil
114
204
+
Ser
GCT
[ENA]
¢þ
>WENV180309272
OBJS01000009
[OBJS] beach sand metagenome; beach sand
62728
62818
+
Ser
GCT
[ENA]
¢þ
>WENV180315261
OBKH01051927
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
195
285
+
Ser
GCT
[ENA]
¢þ
>WENV180321057
OBKQ01096130
[OBKQ] soil metagenome; Clay
208
298
+
Arg
GCG
[ENA]
¢þ
>WENV180342163
OBLJ01000121
[OBLJ] soil metagenome; Clay
1098
1188
+
Ser
GCT
[ENA]
¢þ
>WENV180343143
OBLK01000016
[OBLK] soil metagenome; Clay
112372
112462
+
Ser
GCT
[ENA]
¢þ
>WENV180350987
OBLQ010020034
[OBLQ] soil metagenome; soil
1668
1578
-
Ser
GCT
[ENA]
¢þ
>WENV180351205
OBLQ010033092
[OBLQ] soil metagenome; soil
1138
1048
-
Ser
GCT
[ENA]
¢þ
>WENV180693480
OCZS011271677
[OCZS] soil metagenome; soil
174
84
-
Ser
GCT
[ENA]
¢þ
>WENV181144444
OEHO01018654
[OEHO] metagenome; unknown
189
99
-
Ser
GCT
[ENA]
¢þ
>WENV181144806
OEHO01099233
[OEHO] metagenome; unknown
82
172
+
Ser
GCT
[ENA]
¢þ
>WENV181166690
OEIU01001164
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
6597
6687
+
Ser
GCT
[ENA]
¢þ
>WENV181170242
OEIV010032957
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
65
155
+
Ser
GCT
[ENA]
¢þ
>WENV181191576
OEPS010121037
[OEPS] soil metagenome; soil
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV181288217
OFGY01027279
[OFGY] soil metagenome; Clay
133
223
+
Ser
GCT
[ENA]
¢þ
>WENV181291928
OFHD01010389
[OFHD] soil metagenome; Clay
675
585
-
Ser
GCT
[ENA]
¢þ
>WENV181292524
OFHF01000061
[OFHF] soil metagenome; Clay
2551
2641
+
Ser
GCT
[ENA]
¢þ
>WENV181293096
OFHG01000023
[OFHG] soil metagenome; Clay
63778
63868
+
Ser
GCT
[ENA]
¢þ
>WENV181294360
OFHH01000504
[OFHH] soil metagenome; Clay
6234
6324
+
Ser
GCT
[ENA]
¢þ
>WENV181295214
OFHI01004811
[OFHI] soil metagenome; Clay
396
306
-
Ser
GCT
[ENA]
¢þ
>WENV181295643
OFHJ01000052
[OFHJ] soil metagenome; Clay
9142
9232
+
Ser
GCT
[ENA]
¢þ
>WENV181295821
OFHJ01000868
[OFHJ] soil metagenome; Clay
9059
9149
+
Ser
GCT
[ENA]
¢þ
>WENV181296918
OFHK01002376
[OFHK] soil metagenome; Clay
3907
3997
+
Ser
GCT
[ENA]
¢þ
>WENV181378232
OFRA01104136
[OFRA] wastewater metagenome; Lake Maggiore Verbania
220
310
+
Ser
GCT
[ENA]
¢þ
>WENV181415215
OGCL01006089
[OGCL] hot springs metagenome; Hot spring water
2836
2746
-
Ser
GCT
[ENA]
¢þ
>WENV183725136
PJQE01165184
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
166
256
+
Ser
GCT
[ENA]
¢þ
>WENV170013397
AUZX01002186
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
471
381
-
Ser
GCT
[ENA]
¢þ
>WENV170013828
AUZZ01010465
[AUZZ] mine drainage metagenome; submerged non-stratified mat biofilm (B2A) from acid streamer/mats thriving at Los Rueldos
275
365
+
Ser
GCT
[ENA]
¢þ
>WENV170564429
CZKO01000098
[CZKO] soil metagenome genome assembly CiPEHR-AK-2010-FBin.10, contig:; soil
554
464
-
Ser
GCT
[ENA]
¢þ
>WENV170646207
JQGG01030182
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
133
223
+
Ser
GCT
[ENA]
¢þ
>WENV170650111
JRYD01011950
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
2795
2885
+
Ser
GCT
[ENA]
¢þ
>WENV170963438
MRWG01000186
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
53478
53568
+
Ser
GCT
[ENA]
¢þ
>C191004418
AP018724
Gammaproteobacteria
Sulfurivermis fontis JG42 [AP018724]
894373
894463
+
Ser
GCT
-
¡û
>W09113250
ABYM01000008
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGR7 [ABYM]
93599
93509
-
Ser
GCT
[ENA]
¡û
>C09110597
CP001339
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGr7 HL-EbGR7 [CP001339]
1387757
1387847
+
Ser
GCT
[Ensembl]
¡û
>SRA1013999
SRR023821.33477
Pru Toh Daeng peat swamp (SRP001114)
145
235
+
Ser
GCT
[SRA]
>SRA1014015
SRR023821.40527
Pru Toh Daeng peat swamp (SRP001114)
145
235
+
Ser
GCT
[SRA]
>SRA1014072
SRR023821.82182
Pru Toh Daeng peat swamp (SRP001114)
145
235
+
Ser
GCT
[SRA]
>C151016190
CP007029
Gammaproteobacteria
Thioalkalivibrio paradoxus ARh 1 [CP007029]
1989049
1988959
-
Ser
GCT
[Ensembl]
¡û
>W11177746
AGBG01000034
Gammaproteobacteria
Ectothiorhodospira sp. PHS-1 [AGBG]
23689
23779
+
Ser
GCT
[ENA]
¡û
>W11178577
AGFB01000002
Gammaproteobacteria
Thioalkalivibrio thiocyanoxidans ARh 4 [AGFB]
91275
91365
+
Ser
GCT
[ENA]
¡û
>C161038391
CP011971
Gammaproteobacteria
Steroidobacter denitrificans DSM 18526 [CP011971]
2582014
2582104
+
Ser
GCT
[Ensembl]
¡û
>C131010923
CP003989
Gammaproteobacteria
Thioalkalivibrio nitratireducens DSM 14787 [CP003989]
1436148
1436238
+
Ser
GCT
[Ensembl]
¡û
>W1610760531
LNKA01000010
Gammaproteobacteria
Legionella adelaidensis [LNKA]
76776
76686
-
Ser
GCT
[ENA]
¡û
>W1610778181
LNYK01000016
Gammaproteobacteria
Legionella londiniensis [LNYK]
113529
113619
+
Ser
GCT
[ENA]
¡û
>W1710550773
FOFO01000006
Gammaproteobacteria
Ectothiorhodospira magna [FOFO]
92833
92923
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK