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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.171154 (66 seq.)
>C171085193
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
2383412
2383336
-
Arg
TCT
-
¡û
>W131050720
AMXA01000011
Betaproteobacteria
Thauera sp. 28 [AMXA]
83213
83137
-
Arg
TCT
[ENA]
¡û
>W131050763
AMXB01000006
Betaproteobacteria
Thauera sp. 27 [AMXB]
127479
127403
-
Arg
TCT
[ENA]
¡û
>W131050802
AMXC01000002
Betaproteobacteria
Thauera sp. 63 [AMXC]
234392
234316
-
Arg
TCT
[ENA]
¡û
>W131050880
AMXD01000076
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
11135
11211
+
Arg
TCT
[ENA]
¡û
>W131050978
AMXF01000067
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
2957
3033
+
Arg
TCT
[ENA]
¡û
>C001315
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
2308196
2308120
-
Arg
TCT
[Ensembl]
¡û
>C001365
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
3482360
3482436
+
Arg
TCT
[Ensembl]
¡û
>WENV180000119
CZVZ01001240
[CZVZ] metagenome; unknown
2551
2627
+
Arg
TCT
[ENA]
¡û
>WENV180285543
OBID01514976
[OBID] metagenome; sludge
71
147
+
Arg
TCT
[ENA]
¡û
>W141078515
ATJV01000048
Betaproteobacteria
Thauera terpenica 58Eu [ATJV]
201086
201162
+
Arg
TCT
[ENA]
¡û
>W08008011
ABKT01000029
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
17014
16941
-
Arg
TCT
[ENA]
¡û
>WENV170000200
AERA01023750
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
197
121
-
Arg
TCT
[ENA]
¡û
>WENV170560984
CZCA01001741
[CZCA] anaerobic digester metagenome; anaerobic digester
4165
4089
-
Arg
TCT
[ENA]
¡û
>WENV170650759
JRYE01016617
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
1519
1595
+
Arg
TCT
[ENA]
¡û
>WENV170654715
JRYL01008245
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
2166
2090
-
Arg
TCT
[ENA]
¡û
>WENV170654850
JRYL01039720
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
43
119
+
Arg
TCT
[ENA]
¡û
>C181042984
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
1220906
1220982
+
Arg
TCT
-
¡û
>C181060442
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
1491312
1491236
-
Arg
TCT
-
¡û
>C181060485
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
4261715
4261639
-
Arg
TCT
-
¡û
>C181081488
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
1405940
1405864
-
Arg
TCT
-
¡û
>C181121192
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
1582925
1583001
+
Arg
TCT
-
¡û
>C181164202
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
1440797
1440721
-
Arg
TCT
-
¡û
>C181165146
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
1126367
1126443
+
Arg
TCT
-
¡û
>C181176818
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
1861656
1861580
-
Arg
TCT
-
¡û
>C191022909
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
2923309
2923233
-
Arg
TCT
-
¡û
>W141561729
JHYR01000014
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
8627
8551
-
Arg
TCT
[ENA]
¡û
>W1810444883
PZKC01000001
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
376006
375930
-
Arg
TCT
[ENA]
¡û
>W1810679164
QKOE01000007
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
117610
117686
+
Arg
TCT
[ENA]
¡û
>W2011691822
SSOC01000001
Betaproteobacteria
Azoarcus sp. CC-YHH838 [SSOC]
368908
368984
+
Arg
TCT
[ENA]
¡û
>W2011691892
SSOD01000008
Betaproteobacteria
Azoarcus sp. CC-YHH848 [SSOD]
60832
60908
+
Arg
TCT
[ENA]
¡û
>W2012092692
VMNI01000007
Betaproteobacteria
Denitromonas halophilus SFB-1 [VMNI]
316901
316977
+
Arg
TCT
[ENA]
¡û
>W2012092721
VMNJ01000001
Betaproteobacteria
Denitromonas halophilus SFB-2 [VMNJ]
316901
316977
+
Arg
TCT
[ENA]
¡û
>W2012092783
VMNK01000011
Betaproteobacteria
Denitromonas halophilus SFB-3 [VMNK]
52325
52401
+
Arg
TCT
[ENA]
¡û
>W2012437825
WTVG01000039
Betaproteobacteria
Aromatoleum anaerobium LuFRes1 [WTVG]
33153
33229
+
Arg
TCT
[ENA]
¡û
>W2012437884
WTVH01000039
Betaproteobacteria
Aromatoleum buckelii U120 [WTVH]
2182
2106
-
Arg
TCT
[ENA]
¡û
>W2012437929
WTVI01000012
Betaproteobacteria
Azoarcus communis SWub3 = DSM 12120 [WTVI]
64885
64961
+
Arg
TCT
[ENA]
¡û
>W2012437996
WTVJ01000085
Betaproteobacteria
Azoarcus communis LMG 5514 [WTVJ]
190
266
+
Arg
TCT
[ENA]
¡û
>W2012438011
WTVK01000004
Betaproteobacteria
Aromatoleum evansii KB740 [WTVK]
30577
30501
-
Arg
TCT
[ENA]
¡û
>W2012438241
WTVO01000088
Betaproteobacteria
Aromatoleum aromaticum pCyN1 [WTVO]
12428
12504
+
Arg
TCT
[ENA]
¡û
>W2012438284
WTVP01000031
Betaproteobacteria
Aromatoleum bremense PbN1 [WTVP]
18596
18672
+
Arg
TCT
[ENA]
¡û
>W2012438378
WTVR01000021
Betaproteobacteria
Aromatoleum petrolei ToN1 [WTVR]
36181
36105
-
Arg
TCT
[ENA]
¡û
>W2110263261
JACTAH010000001
Betaproteobacteria
Thauera sp. CAU 1555 [JACTAH]
1783871
1783795
-
Arg
TCT
[ENA]
¡û
>W2110289760
JACYTO010000001
Betaproteobacteria
Thauera sp. CAU 1555 [JACYTO]
1783871
1783795
-
Arg
TCT
[ENA]
¡û
>W2110422409
JAEKFT010000005
Betaproteobacteria
Denitromonas sp. IR12 [JAEKFT]
22664
22588
-
Arg
TCT
[ENA]
¡û
>W2110507318
JAFKAB010000001
Betaproteobacteria
Zoogloeaceae bacterium ZN11-R3-1 [JAFKAB]
844562
844486
-
Arg
TCT
[ENA]
¡û
>C201219432
CP048836
Betaproteobacteria
Azoarcus sp. M9-3-2 [CP048836]
1755209
1755285
+
Arg
TCT
-
¡û
>C211123576
CP059467
Betaproteobacteria
Aromatoleum bremense PbN1 [CP059467]
132986
132910
-
Arg
TCT
-
¡û
>C211124047
CP059560
Betaproteobacteria
Aromatoleum petrolei ToN1 [CP059560]
863099
863023
-
Arg
TCT
-
¡û
>C211289729
CP071321
Betaproteobacteria
Zoogloeaceae bacterium H1-1-2A [CP071321]
2033217
2033293
+
Arg
TCT
-
¡û
>C231253998
CP088935
Betaproteobacteria
Thauera sp. WB-2 [CP088935]
1981603
1981527
-
Arg
TCT
-
¡û
>C231309615
CP091977
Betaproteobacteria
Aromatoleum aromaticum pCyN1 [CP091977]
2083065
2083141
+
Arg
TCT
-
¡û
>C231394179
CP097870
Betaproteobacteria
Thauera sp. GDN1 [CP097870]
1714274
1714198
-
Arg
TCT
-
¡û
>C241385228
OW011623
Betaproteobacteria
Thauera sp. PIV-1 Piv1 [OW011623]
3291458
3291382
-
Arg
TCT
-
¡û
>C10113218
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
2131145
2131069
-
Arg
TCT
[Ensembl]
¡û
>WENV11100558
AERA01023750
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
197
121
-
Arg
TCT
[ENA]
¡û
>W1511398281
JTDM01000013
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
207069
207145
+
Arg
TCT
[ENA]
¡û
>W1511581030
LARU01000004
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
555763
555687
-
Arg
TCT
[ENA]
¡û
>W1511686473
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
2201394
2201318
-
Arg
TCT
[ENA]
¡û
>W11185893
CACR01001381
Betaproteobacteria
Thauera selenatis AX [CACR]
7572
7648
+
Arg
TCT
[ENA]
¡û
>C161075129
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
574521
574445
-
Arg
TCT
[Ensembl]
¡û
>C161095103
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
2381433
2381357
-
Arg
TCT
-
¡û
>W1610042925
BAZL01000591
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
920
996
+
Arg
TCT
[ENA]
¡û
>C131000299
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
2561980
2562056
+
Arg
TCT
[Ensembl]
¡û
>W1710040085
BAZL01000591
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
920
996
+
Arg
TCT
[ENA]
¡û
>W1710539439
FNVJ01000001
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
286280
286356
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK