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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.171167 (40 seq.)
>WENV180391281
OBPM01072393
[OBPM] marine metagenome; ENVO:00002010
66
142
+
Arg
TCT
[ENA]
¡û
>WENV181221621
OFCW01000109
[OFCW] microbial mat metagenome; Microbial Mat
6772
6848
+
Arg
TCT
[ENA]
¡û
>WENV181836276
OGVJ01003329
[OGVJ] freshwater metagenome; freshwater
1018
942
-
Arg
TCT
[ENA]
¡û
>WENV181839300
OGVO01000579
[OGVO] freshwater metagenome; freshwater
2686
2610
-
Arg
TCT
[ENA]
¡û
>WENV181841536
OGVS01000632
[OGVS] freshwater metagenome; freshwater
1823
1747
-
Arg
TCT
[ENA]
¡û
>WENV181847365
OGVY01017345
[OGVY] freshwater metagenome; freshwater
427
351
-
Arg
TCT
[ENA]
¡û
>WENV181853981
OGWJ01003596
[OGWJ] freshwater metagenome; freshwater
739
663
-
Arg
TCT
[ENA]
¡û
>WENV181855179
OGWL01001506
[OGWL] freshwater metagenome; freshwater
448
372
-
Arg
TCT
[ENA]
¡û
>W141234408
BAWN01000006
Betaproteobacteria
Serpentinimonas barnesii H1 [BAWN]
110422
110346
-
Arg
TCT
[ENA]
¡û
>W141241337
CAHF01000011
Betaproteobacteria
Noviherbaspirillum massiliense JC206 [CAHF]
647547
647471
-
Arg
TCT
[ENA]
¡û
>WENV170018840
BBPD01001379
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3936
4012
+
Arg
TCT
[ENA]
¡û
>WENV170018841
BBPD01001380
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
9489
9565
+
Arg
TCT
[ENA]
¡û
>WENV170019934
BBPE01001609
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
7162
7086
-
Arg
TCT
[ENA]
¡û
>WENV170020102
BBPE01002913
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1238
1162
-
Arg
TCT
[ENA]
¡û
>WENV170020114
BBPE01003021
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
334
258
-
Arg
TCT
[ENA]
¡û
>WENV170573200
FLYJ01003832
[FLYJ] hot springs metagenome; Sediment
504
580
+
Arg
TCT
[ENA]
¡û
>C181078380
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
789950
790026
+
Arg
TCT
-
¡û
>C181219000
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
704122
704046
-
Arg
TCT
-
¡û
>C181219111
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
635330
635254
-
Arg
TCT
-
¡û
>C151002115
AP014568
Betaproteobacteria
Serpentinimonas raichei A1 [AP014568]
1018184
1018108
-
Arg
TCT
[Ensembl]
¡û
>C151002134
AP014569
Betaproteobacteria
Serpentinimonas maccroryi B1 [AP014569]
1206324
1206400
+
Arg
TCT
[Ensembl]
¡û
>W2010488528
JAAIVB010000037
Betaproteobacteria
Noviherbaspirillum sp. 17J57-3 [JAAIVB]
97875
97951
+
Arg
TCT
[ENA]
¡û
>W2011626362
SLZQ01000001
Betaproteobacteria
Paucimonas lemoignei DSM 7445 [SLZQ]
702420
702344
-
Arg
TCT
[ENA]
¡û
>W2012012882
VFAH01000003
Betaproteobacteria
Noviherbaspirillum sp. 122213-3 [VFAH]
147690
147614
-
Arg
TCT
[ENA]
¡û
>W2110020316
BMDP01000002
Betaproteobacteria
Oxalicibacterium solurbis CCM 7664 [BMDP]
573647
573723
+
Arg
TCT
[ENA]
¡û
>W2110072040
BPMK01000010
Betaproteobacteria
Noviherbaspirillum sp. NCCP-691 [BPMK]
21662
21738
+
Arg
TCT
[ENA]
¡û
>W2110273320
JACVPP010000001
Betaproteobacteria
Polynucleobacter sp. MWH-HuK1 [JACVPP]
1432812
1432888
+
Arg
TCT
[ENA]
¡û
>W2110292655
JACYXF010000011
Betaproteobacteria
Noviherbaspirillum malthae CC-AFH3 [JACYXF]
130363
130287
-
Arg
TCT
[ENA]
¡û
>C201043432
CP028942
Betaproteobacteria
Polynucleobacter sp. MWH-UH21B [CP028942]
974271
974347
+
Arg
TCT
-
¡û
>C211144801
CP061292
Betaproteobacteria
Polynucleobacter sp. MWH-UH24A [CP061292]
1158305
1158229
-
Arg
TCT
-
¡û
>C211145453
CP061321
Betaproteobacteria
Polynucleobacter sp. MWH-UH2A [CP061321]
975076
975152
+
Arg
TCT
-
¡û
>C241014151
AP028136
Betaproteobacteria
Polynucleobacter sp. HIN5 [AP028136]
1165975
1165899
-
Arg
TCT
-
¡û
>C241014190
AP028137
Betaproteobacteria
Polynucleobacter sp. HIN6 [AP028137]
1136591
1136515
-
Arg
TCT
-
¡û
>C241014228
AP028138
Betaproteobacteria
Polynucleobacter sp. HIN7 [AP028138]
1101069
1100993
-
Arg
TCT
-
¡û
>C241014266
AP028139
Betaproteobacteria
Polynucleobacter sp. HIN8 [AP028139]
1244808
1244732
-
Arg
TCT
-
¡û
>C241014267
AP028139
Betaproteobacteria
Polynucleobacter sp. HIN8 [AP028139]
1240759
1240683
-
Arg
TCT
-
¡û
>C241014305
AP028140
Betaproteobacteria
Polynucleobacter sp. HIN9 [AP028140]
1097898
1097822
-
Arg
TCT
-
¡û
>C241014344
AP028141
Betaproteobacteria
Polynucleobacter sp. HIN10 [AP028141]
1089030
1088954
-
Arg
TCT
-
¡û
>C241014383
AP028142
Betaproteobacteria
Polynucleobacter sp. HIN11 [AP028142]
1088519
1088443
-
Arg
TCT
-
¡û
>W1511429864
JUEA01000073
Betaproteobacteria
Comamonadaceae bacterium BICA1-1 [JUEA]
37289
37213
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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